LOCUS       NM_001109502            1305 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus similar to human chromosome 6 open reading frame
            141 (C9h6orf141), mRNA.
ACCESSION   NM_001109502 XM_001067042 XM_001069617
VERSION     NM_001109502.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1305)
  AUTHORS   Cui W, Dai X, Marcho C, Han Z, Zhang K, Tremblay KD and Mager J.
  TITLE     Towards Functional Annotation of the Preimplantation Transcriptome:
            An RNAi Screen in Mammalian Embryos
  JOURNAL   Sci Rep 6, 37396 (2016)
   PUBMED   27869233
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1305)
  AUTHORS   Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M,
            Walenz B, Mobarry C, Merkulov GV, Charlab R, Dew I, Deng Z, Istrail
            S, Li P and Sutton G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473987.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001067042.1, XM_001069617.1.
            
            Sequence Note: The intron in the 3' UTR makes this transcript a
            candidate for nonsense-mediated decay (NMD). It is represented as
            protein-coding because the CDS is conserved within mammals.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ212996.1, BC167028.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132264
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            NMD candidate          :: translation inferred from conservation
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1305
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q13"
     gene            1..1305
                     /gene="C9h6orf141"
                     /note="similar to human chromosome 6 open reading frame
                     141"
                     /db_xref="GeneID:688459"
                     /db_xref="RGD:1588829"
     exon            1..787
                     /gene="C9h6orf141"
                     /inference="alignment:Splign:2.1.0"
     CDS             24..563
                     /gene="C9h6orf141"
                     /codon_start=1
                     /product="uncharacterized protein C6orf141 homolog"
                     /protein_id="NP_001102972.1"
                     /db_xref="GeneID:688459"
                     /db_xref="RGD:1588829"
                     /translation="MNDLLSRMEPGPPRGSFACSPGGEGHGPPLDSGARNPALAGINR
                     SLSAASGNLISQTGENVDRQSWVREKVLFLLHPQRCLGTQADPACGGLVDSEDLPRSF
                     GDHRYSEPNPKPSRRRIATAPQGQPRDPEATPRSVLVRVVDYQVTQEVLWTAWTKGST
                     TTRTEERSVTAVTFRTQRE"
     exon            788..1305
                     /gene="C9h6orf141"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagaactgga gaaacatggg cgtatgaatg atctcctctc ccggatggag cccggcccgc
       61 ctcggggtag ctttgcgtgc tctccgggtg gggaggggca tgggccaccc ttggattccg
      121 gcgcccggaa tcccgcgctg gcggggatca ataggtccct atcagcagca agtgggaact
      181 tgatatcgca gaccggagag aatgtggatc gccagtcctg ggtcagagag aaagtgctct
      241 ttcttctgca cccacagagg tgtttgggaa cacaagcgga ccctgcttgt ggagggctgg
      301 tggatagcga ggaccttccc cgatcgtttg gagaccaccg ctattccgaa ccgaatccga
      361 agccttcccg caggcgcatt gccacggccc cccaaggcca gccccgggac cccgaagcca
      421 cacccaggtc ggtgttggtg cgggttgtgg attaccaggt gacgcaggag gtgctgtgga
      481 ccgcatggac caaggggagt acgaccacaa ggaccgagga gcgctctgtg accgcagtca
      541 cctttcggac tcagagggag tgacacagct catggggcac cgaagcccca gccaaaccca
      601 gatcgctcca aagacctaat gctcgaagga aattaaacac acagatctct ggagcctgag
      661 aaaggttcca ggacattgga tgcgggaaaa tgcttgaaga acaaatttta agcagcctga
      721 gatgtcctct gtggcttatg tgtctcacgg tagttaaaga gaagaaaagg tgtcttttac
      781 actggtggtg aagaacattt tcctttcctg tttcggaaga gcatctgaac ttgtcctcag
      841 taccaaggaa tctctccaac agctgggtct tgactctagg acttaacctc cacttaaaac
      901 aacttcatct aaaattgtgt ctgttagata aattatatta aagactcccc atctgggcac
      961 attatgactg ggacaaatgt ccaagtcaca taactaccaa ggatcaggca agtgtttacc
     1021 tcctttttat tagtatgtgt ttttttttat tgtttgaggc aatggctcac tatatacccc
     1081 aggctgactt ggacttgcca tttaacctgt gacaaactga ccttgagatc tttctatgtc
     1141 aacctcccac atattgagat gacaatatgt gccggaatgc ctggccgaca cctctcttta
     1201 atccctttag tcacacctgt tattacctgt gatgctggat acattggacc tgctgatata
     1261 ttgaggggct ataccagctg tttctattaa aactcactgt gattc
//
