LOCUS       XM_039103524            4814 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus complement C7 (C7), mRNA.
ACCESSION   XM_039103524
VERSION     XM_039103524.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 11 indels
            internal stop codons :: corrected 1 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-155               JACYVU010000066.1  1804304-1804458     c
            156-211             JACYVU010000066.1  1799880-1799935     c
            212-287             JACYVU010000066.1  1797459-1797534     c
            288-429             JACYVU010000066.1  1791671-1791812     c
            430-577             JACYVU010000066.1  1788922-1789069     c
            578-716             JACYVU010000066.1  1787656-1787794     c
            717-887             JACYVU010000066.1  1782602-1782772     c
            888-956             JACYVU010000066.1  1780673-1780741     c
            957-957             "N"                1-1
            958-1131            JACYVU010000066.1  1780499-1780672     c
            1132-1245           JACYVU010000066.1  1778034-1778147     c
            1246-1343           JACYVU010000066.1  1764482-1764579     c
            1344-1344           "N"                1-1
            1345-1415           JACYVU010000066.1  1764411-1764481     c
            1416-1508           JACYVU010000066.1  1760722-1760814     c
            1509-1562           JACYVU010000066.1  1760667-1760720     c
            1563-1610           JACYVU010000066.1  1760618-1760665     c
            1611-1644           JACYVU010000066.1  1760582-1760615     c
            1645-1706           JACYVU010000066.1  1759627-1759688     c
            1707-1708           "NN"               1-2
            1709-1781           JACYVU010000066.1  1759554-1759626     c
            1782-1782           "N"                1-1
            1783-1816           JACYVU010000066.1  1759520-1759553     c
            1817-1904           JACYVU010000066.1  1755767-1755854     c
            1905-1928           JACYVU010000066.1  1753569-1753592     c
            1929-1997           JACYVU010000066.1  1753499-1753567     c
            1998-2037           JACYVU010000066.1  1753458-1753497     c
            2038-2135           JACYVU010000066.1  1750374-1750471     c
            2136-2136           "N"                1-1
            2137-2195           JACYVU010000066.1  1750315-1750373     c
            2196-2232           JACYVU010000066.1  1750277-1750313     c
            2233-2326           JACYVU010000066.1  1735699-1735792     c
            2327-2511           JACYVU010000066.1  1731115-1731299     c
            2512-4814           JACYVU010000066.1  1727472-1729774     c
FEATURES             Location/Qualifiers
     source          1..4814
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4814
                     /gene="C7"
                     /note="complement C7; The sequence of the model RefSeq
                     transcript was modified relative to its source genomic
                     sequence to represent the inferred CDS: inserted 6 bases
                     in 5 codons; deleted 7 bases in 6 codons; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 114 ESTs, 2 Proteins, and 86% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:117517"
                     /db_xref="RGD:620318"
     CDS             150..2693
                     /gene="C7"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 6 bases in 5 codons;
                     deleted 7 bases in 6 codons; substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:1767..1769,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: complement component C7"
                     /protein_id="XP_038959452.1"
                     /db_xref="GeneID:117517"
                     /db_xref="RGD:620318"
                     /translation="MKATSLLILVGFMTEFQIFSRASSPVNCEWDSYGPWSECNGCTK
                     TQTRRRSIAVYGQYGGHRCVGSAFETQSCNPERGCPTEEGCGDRFRCFSGQCISKSLV
                     CNGDSDCEEDGADEDRCEGAESRPSCDTVKPPPNIELTGNGYNALTGQFRNRVINTKS
                     FGGQCRKVFSGDGRDFYRLSGNILSYTFQVKIDNDFNYEFYNSSWSYVKHTSTDYTSS
                     SSNRFLFFSSSSNRHTQSSSTKEIYMKKSYKLLVVQNTVEVAQFINNNPEFXQLAEPF
                     WRELSHLPTLYDYSAYRRLIDQYGTHYLQSGSLGGEYRVLFYVDSGDVKHRGFGSVQE
                     KACSSSDFKFIFVSSANQRCKELENIFKSNSGNQGRVPSRRAICHRWSPGFVADLVFL
                     DLDNPAXNRQRYSSWASSVTGLPQVINRGYLTPLYELVKEVPCASVKRLYLKRALEEY
                     LDEFDPCHCRPCQNGGIASVVGTQCQCHCKPYTYGMACEQGVLVGDQAGGVDGGWSCW
                     SSWSPCVQGRNXRSRECNNPPPRAGGKACIGXTTESXQCEDQDLENLRLLEPHCFHLS
                     LVPKGFCPSPPALKDGFVQSEGTMFPIGKNIVYACNEGYSLVGDPVARCGEDLQWLVG
                     EMHCQKIACFLPGGMNGMRSDPQKPFYMVGEKVTPFLCXGGMSLEGPSTFLCGSSLKW
                     SPELKSAQCVQKVTSTLTPAAPACQPWEKLKNSKCVCKMPYECGSSLDVCARDERSNR
                     ILPLTICKMHVLQCQGRNYALVGKNSCTLPASTEKACGACPIWSKCDAQNSKCVCREA
                     SECQKAGYRICVEVNGKEETMSECEAGILRCRGQSISITAIKPCAQEVQ"
ORIGIN      
        1 ggagaatcgg gttgagactc agcacagctg actttataaa tgagtgggaa aggaacccag
       61 aacaggacaa actgtggggg aggcaaaagc ctgtctgtct ttacagatga aattttcttg
      121 ttctcttctg ccctgaatgt ttcccaagca tgaaggcaac aagcttatta attttggtgg
      181 gatttatgac agagtttcaa atcttctcaa gagcctcctc tccagtcaac tgtgagtggg
      241 actcctatgg cccttggtca gaatgtaatg gctgtaccaa gactcagact cgaaggcgtt
      301 cgattgctgt ttatgggcaa tatggaggcc atcggtgtgt ggggagtgct tttgaaacac
      361 aatcctgcaa ccctgaacga ggctgtccaa ctgaagaggg ctgtggggac cggtttaggt
      421 gtttttcagg tcagtgcatc agcaaatcgt tggtttgcaa tggggattct gactgtgagg
      481 aagatggtgc tgatgaagac agatgcgagg gtgccgaaag cagaccttcc tgtgacactg
      541 ttaaaccccc tcccaacata gaacttaccg gcaacggtta caatgcactt actggccagt
      601 ttaggaacag agtcatcaac accaaaagtt tcggtggtca gtgcaggaaa gtgttcagcg
      661 gggacggaag agatttctac agactgagtg gaaatatcct ctcttatacc tttcaggtca
      721 aaatagataa tgattttaac tatgaatttt acaacagcag ttggtcttac gtaaagcata
      781 catccacaga ctatacatca tctagttcaa acaggttctt atttttctcc tcctcatcaa
      841 atcgacacac tcagagttca agtaccaagg aaatctacat gaaaaagagt tataaactgt
      901 tggttgttca gaacacggtt gaagtggccc agtttattaa taataatcct gaatttntac
      961 aacttgcgga gccattctgg agggaactct cccaccttcc cactctgtat gactatagtg
     1021 cctaccgacg gttaattgac cagtatggga cacattacct gcagtccggg tccttaggag
     1081 gagaatatag agttctattt tatgtggatt caggagatgt caaacacagg ggatttggat
     1141 ctgtccagga gaaggcatgt tcctcttcag actttaagtt tatttttgta tcatcagcaa
     1201 atcagagatg taaggaactg gaaaacattt tcaagtcaaa ttcaggaaac cagggcaggg
     1261 tgccttcgag gagagccatc tgtcatcggt ggagccctgg ctttgtagct gacctagttt
     1321 tcctggacct ggataatcct gctnggaaca gacagcgcta ctcctcctgg gccagctctg
     1381 taacaggtct tccccaagtc ataaacagag ggtatctgac accgttgtac gagctggtca
     1441 aggaagtgcc ctgtgcctct gtgaaaagac tgtacctgaa gcgggctctt gaggagtact
     1501 tagatgaatt tgacccctgc cattgccggc cttgccagaa tggtggcatc gctagtgttg
     1561 tggggacaca gtgccagtgt cactgcaaac catacacata tggtatggcg tgtgagcaag
     1621 gagtccttgt cggcgatcaa gcaggagggg ttgatggagg ctggagctgt tggtcctctt
     1681 ggagcccctg tgttcaagga agaaatnnca ggagccgaga atgcaataat ccccctccca
     1741 gagcgggtgg aaaggcctgt attggataaa cgactgaaag cnagcagtgc gaagaccagg
     1801 acttggagaa cttgcgatta cttgagccac attgctttca tttgtctttg gttccaaaag
     1861 gattctgccc atcaccccct gccttaaaag atggatttgt tcaaagtgaa ggtaccatgt
     1921 ttcctattgg aaaaaacata gtatatgctt gcaatgaagg gtattctctt gtcggagatc
     1981 ctgttgccag atgtggagaa gacttacagt ggcttgtggg ggaaatgcac tgtcaaaaaa
     2041 ttgcctgttt tctacctgga gggatgaatg gcatgcggag tgacccccag aaacccttct
     2101 acatggttgg tgagaaggtg acccctttcc tgtgcnacgg tggtatgtcc ttagaaggtc
     2161 cttccacctt cctctgcggc tccagcctta agtggagtcc tgagctgaag agtgcccagt
     2221 gtgtgcaaaa agtcaccagc actctaacac cagcagctcc tgcatgtcag ccctgggaga
     2281 aactgaagaa ctcaaaatgc gtctgcaaaa tgccctatga gtgcggatcc tccttggatg
     2341 tgtgtgcccg agatgagcga agcaacagga tactgccttt gaccatctgc aagatgcatg
     2401 ttctccagtg tcagggaaga aattatgctc tcgttggcaa gaacagctgt actctgcctg
     2461 cctcgactga gaaagcgtgt ggtgcatgcc caatatggag caaatgtgat gctcagaaca
     2521 gcaaatgtgt ctgcagagaa gcgtcggagt gccagaaagc agggtacaga atctgcgtgg
     2581 aagtgaatgg caaagaggag acaatgtccg agtgcgaggc tggcatctta aggtgcagag
     2641 ggcagagcat ctccatcaca gccataaagc cctgtgccca agaagtccag taggacctgg
     2701 aggcggtggg gcttcatcct cttcatcaga agctaatggg caatggatac tgggttaaaa
     2761 catctataac tggtccttag accactttcc tagcaggaag gcatgatcct ttctgctttc
     2821 tcatcaatat ttacttctcc cttctgtgtt cagccacctg tgcaaacaac ccttttgttt
     2881 tctcaaatcc cagtccagat ttccttcctt tacaaggggc agtacgaaga acccttatga
     2941 accatggcat gctgagctat ttgtgaggtt tttggaaaaa tgcattgggc tttacctttt
     3001 tttttttttt gtctgtaaac ttacaggatg agactagaga cacatgttat ccattcattc
     3061 atccctatga ttctgttgaa tatgattgac ccagtccatg ggtctgtgtt gattaggaaa
     3121 acagaaagaa cataatttcc tgattagaga gcttgacttt cctcagtgaa atcaaacgca
     3181 aacacatgca cacacattgg gagaaacaga cagatgtaat tattttcatc tcgaggggta
     3241 atgtcacgct tcgccctact cagccatccc cacgtgtagg atctttcttc ttgtcagaag
     3301 atcaaactac ttaaatgtca gagcagaatt catcatgcta tggtcacagg gcaccgtctg
     3361 ccttcttgtc tgagaacaaa tataattcag tctcttgagg gctttcttca gtgtgtgtca
     3421 aatataaacc tgaaaatcac tctgcttttg agagaagtgt cagtttatgc tagagctatt
     3481 gagagatgca tatttgagaa gaatcttccc taatgtggtc acacccttag attttttttt
     3541 ccagaagcac acaatttgag acattggaat ttgctttatt tcttattcat ctttcattaa
     3601 acataacaat agcaagaaat ccagctgtgg aaggtgaagt gtgtgggctg aaatagagct
     3661 taaagtatga acaaacactc tttcttttgt ttttttcctc ccgaggctgt tagatatatt
     3721 tcaaacaaac tttaagttgc taaggagtag aaagtgcatt ccagatccta ttttctttta
     3781 gatgtttttg aagtgtagag tgccagatat cactgctcta gatttagctt tccataacaa
     3841 tttcctttgt ggtttgatgc agatgtaata tatggatgtt gcacagttgt gggtttcatt
     3901 tactgaatac attcacgctt aagcatatta actgtacata ttaactgatt tagaggatac
     3961 tatggattcc acatcttccc tgagcatagg gattgatttg aaaaatgaca gggttggctg
     4021 tcgaccccca tcggaggaag caggtaagga atcacttagg agaactgatc tcaacattct
     4081 tcagttcttt ctattattta cttgtttagc ctggagttaa attcccactc cttgtgagca
     4141 cttctaattt gaaaatccac tttcttcaat attttcaaaa tttaaaactg atggatgacg
     4201 tgacaaaact tccacgagtt aagaattctc cacctctgat ctcatcgcag cagggcacaa
     4261 tccaaggcat gtaaattgac ttccaggttt atgtgacata taaatgaatt ctgtctctag
     4321 atttggatcc cattctccta aatatctcac catgcatgtg cagatattct aaagtctaaa
     4381 aatatctgat attgcaaact tttctggtca aaacattttg gatgagccat ttaacagcca
     4441 aggtatttga gacagaggtt tcaacagcat tcctggagga gacacaaagg acagatgagt
     4501 cacatgaagg atgggaggag ggaaggtggc tgttgatagg tattttgaga cactctattt
     4561 gtgtcctaca caacactccc ccctcccccc aaaccatttt tatgtctatt gacctttcct
     4621 ctagtcatac agggacattc acagttacct acaaagaacc agaattgtaa caagtcaaga
     4681 ggaaacttat ttttgataat gactcattga agatgttttg aaaatttaaa aataagctct
     4741 gtaagcagaa gtctgtgaga aaagcaagaa ggaattgttt gtttattaaa taaataaaag
     4801 gcaaagagaa caaa
//
