LOCUS       NM_001411863            2011 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 1 open reading frame
            87 (C5h1orf87), mRNA.
ACCESSION   NM_001411863 XM_006238420
VERSION     NM_001411863.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Sep 8, 2022 this sequence version replaced XM_006238420.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.28563.1,
                                           SRR26360181.174269.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-43                JAXUCZ010000005.1  116527189-116527231 c
            44-176              JAXUCZ010000005.1  116525548-116525680 c
            177-396             JAXUCZ010000005.1  116509737-116509956 c
            397-534             JAXUCZ010000005.1  116501755-116501892 c
            535-798             JAXUCZ010000005.1  116500881-116501144 c
            799-920             JAXUCZ010000005.1  116493179-116493300 c
            921-1086            JAXUCZ010000005.1  116488651-116488816 c
            1087-1184           JAXUCZ010000005.1  116481935-116482032 c
            1185-1249           JAXUCZ010000005.1  116472802-116472866 c
            1250-1323           JAXUCZ010000005.1  116466091-116466164 c
            1324-1522           JAXUCZ010000005.1  116462905-116463103 c
            1523-2011           JAXUCZ010000005.1  116458270-116458758 c
FEATURES             Location/Qualifiers
     source          1..2011
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q33"
     gene            1..2011
                     /gene="C5h1orf87"
                     /gene_synonym="RGD1560146"
                     /note="similar to human chromosome 1 open reading frame
                     87"
                     /db_xref="GeneID:500505"
                     /db_xref="RGD:1560146"
     exon            1..43
                     /gene="C5h1orf87"
                     /gene_synonym="RGD1560146"
                     /inference="alignment:Splign:2.1.0"
     exon            44..176
                     /gene="C5h1orf87"
                     /gene_synonym="RGD1560146"
                     /inference="alignment:Splign:2.1.0"
     CDS             70..1683
                     /gene="C5h1orf87"
                     /gene_synonym="RGD1560146"
                     /codon_start=1
                     /product="uncharacterized protein C1orf87 homolog"
                     /protein_id="NP_001398792.1"
                     /db_xref="GeneID:500505"
                     /db_xref="RGD:1560146"
                     /translation="MSSPWKTPPSSAPKPEMIVKIIGSKHFRYFVEKPMIRQNETLKT
                     EPQTPLPEPGTDYSRQVRRDLPGPTDSSEQQISAHPAEKEESGQKPESNQKFLTTVLG
                     NRFLDDMISHGANVHCSSVPAGDQSLSYMHSLPRRKSIDWCLENTKDNSGQAVEVVRR
                     PSVMTREDSFLIALVRRELNSCPLSSNLLDKLQKELKTLDPISSGFLHQSQLNRLFLR
                     HKVPLPLPTLKLLCQRFSRRDSPEGVNYGELLCFLKEATKDNLQQNGTAVYSNPRKTP
                     SLSQDKQSTPPQDSSLLSDVNKSLLQILKMALRTYQGKFSVDCLNLNFQKEDHSFSGC
                     LPLPKIMSICSKHGLHITMTLLETLLHHQDLGYRGEIKWKNFVKWLNRASSDLQYDMP
                     AGKNKKEVQENLVNIPEGTQRNTEYVKTSEKNLQPKTSTTSAPEGPVTAFKYRPASEP
                     GEHRAMMKDEQPELWIDRFRKLENALYLCDLSNTGVLEWERAKRLIHNYNLIYKLSLS
                     PRRIDQALRRFRSGENIILEPALQYLKEL"
     exon            177..396
                     /gene="C5h1orf87"
                     /gene_synonym="RGD1560146"
                     /inference="alignment:Splign:2.1.0"
     exon            397..534
                     /gene="C5h1orf87"
                     /gene_synonym="RGD1560146"
                     /inference="alignment:Splign:2.1.0"
     exon            535..798
                     /gene="C5h1orf87"
                     /gene_synonym="RGD1560146"
                     /inference="alignment:Splign:2.1.0"
     exon            799..920
                     /gene="C5h1orf87"
                     /gene_synonym="RGD1560146"
                     /inference="alignment:Splign:2.1.0"
     exon            921..1086
                     /gene="C5h1orf87"
                     /gene_synonym="RGD1560146"
                     /inference="alignment:Splign:2.1.0"
     exon            1087..1184
                     /gene="C5h1orf87"
                     /gene_synonym="RGD1560146"
                     /inference="alignment:Splign:2.1.0"
     exon            1185..1249
                     /gene="C5h1orf87"
                     /gene_synonym="RGD1560146"
                     /inference="alignment:Splign:2.1.0"
     exon            1250..1323
                     /gene="C5h1orf87"
                     /gene_synonym="RGD1560146"
                     /inference="alignment:Splign:2.1.0"
     exon            1324..1522
                     /gene="C5h1orf87"
                     /gene_synonym="RGD1560146"
                     /inference="alignment:Splign:2.1.0"
     exon            1523..2011
                     /gene="C5h1orf87"
                     /gene_synonym="RGD1560146"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agttgagctt ctgaattcca gggtaggaag cgccactttg gtggatctga caagatttgg
       61 agagaggcca tgtcttcacc ttggaagacc ccacctagtt cagcgccaaa gccagagatg
      121 atagtgaaaa ttataggaag taaacacttt cgctacttcg tagaaaagcc aatgattagg
      181 cagaacgaga cattgaagac agaacctcaa accccactcc cggaacccgg gactgattac
      241 tcaaggcagg tacgcagaga cctgccagga cccactgact cttccgagca acaaataagt
      301 gctcacccag ctgagaagga agaaagcggc cagaaaccag agagcaatca gaagttccta
      361 accacagtac tcggtaacag attcctggat gacatgattt cccatggggc aaatgtccac
      421 tgcagctctg taccagcagg agaccaatct ctatcctata tgcatagtct ccccagaaga
      481 aagtctatag actggtgctt ggaaaataca aaggacaact ctggtcaagc tgtggaagtt
      541 gtccgaaggc caagtgtaat gacaagagaa gattcttttc taattgcatt ggtcaggaga
      601 gaactcaact catgcccatt gagctccaat ttgttggaca aacttcagaa agagctgaag
      661 actctggacc ccatctcgtc aggctttctc caccagtcac agctgaaccg cctcttccta
      721 aggcataaag tacctctgcc attaccaaca ctcaagctcc tctgccaaag attttctaga
      781 agggattctc cagaaggggt gaattatgga gagctacttt gttttttgaa agaagcaact
      841 aaagataatt tacagcaaaa tggaacagct gtatatagta acccaaggaa aactccaagt
      901 ctgagccagg ataaacaaag caccccacct caagactcca gcttactgtc tgacgtgaac
      961 aagagcctgc tgcagatttt gaagatggca ctaagaacat accaaggcaa gttcagtgta
     1021 gactgcctca acctgaactt tcaaaaagaa gatcactcat tctctggctg cctgcctctg
     1081 cccaagatca tgtctatatg tagcaagcat ggattgcata taactatgac cctgctggaa
     1141 acattgctcc atcaccaaga tttgggttac cgaggtgaaa taaagtggaa gaattttgtt
     1201 aagtggctga acagggcttc ttctgatttg caatatgata tgccagcagg aaagaataaa
     1261 aaggaagtcc aagagaattt ggttaacatc cctgagggaa cccaaagaaa cactgaatat
     1321 gtgaaaactt cagaaaagaa tctgcagcca aaaacctcta ccacttcagc cccagaaggc
     1381 cctgtgactg cctttaagta caggcctgcc tccgagcctg gtgagcatcg ggccatgatg
     1441 aaggatgaac aacctgagtt atggatagac aggttcagaa agctggaaaa tgccctttat
     1501 ctgtgtgacc tgagcaacac aggagtgctg gagtgggagc gagccaagcg cctcattcac
     1561 aactacaacc tcatttacaa attgtccctg agtccccgga gaatcgacca ggcccttcga
     1621 agattccgtt ctggagaaaa cataatcttg gagccagcac ttcagtactt aaaggagctg
     1681 tgagaacaag aacacattgt gagagcagct gtctctctca tgcccccttt acggggacct
     1741 gtgcttctgc tcaggttgag ggctgggcag agattttgtc ataactaaga cagatgtagc
     1801 tgttctagcc agttttgagc aggatttggc tgtgaggagg aacagttcac aatgatcaga
     1861 gatgcagctt tctcttccga tataagagtc taatcatttg aagtgctctt ctgttctttc
     1921 agtacggtat tatcaatgtg ttagattttt tctacatttc taacaaactg ttaaactgtt
     1981 tttgaaaaaa ccatgagttc atgtgtcaaa a
//
