LOCUS       NM_001107969            1257 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 1 open reading frame
            50 (C5h1orf50), mRNA.
ACCESSION   NM_001107969 XM_001069921 XM_233456
VERSION     NM_001107969.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1257)
  AUTHORS   Rolland,T., Tasan,M., Charloteaux,B., Pevzner,S.J., Zhong,Q.,
            Sahni,N., Yi,S., Lemmens,I., Fontanillo,C., Mosca,R., Kamburov,A.,
            Ghiassian,S.D., Yang,X., Ghamsari,L., Balcha,D., Begg,B.E.,
            Braun,P., Brehme,M., Broly,M.P., Carvunis,A.R., Convery-Zupan,D.,
            Corominas,R., Coulombe-Huntington,J., Dann,E., Dreze,M., Dricot,A.,
            Fan,C., Franzosa,E., Gebreab,F., Gutierrez,B.J., Hardy,M.F.,
            Jin,M., Kang,S., Kiros,R., Lin,G.N., Luck,K., MacWilliams,A.,
            Menche,J., Murray,R.R., Palagi,A., Poulin,M.M., Rambout,X.,
            Rasla,J., Reichert,P., Romero,V., Ruyssinck,E., Sahalie,J.M.,
            Scholz,A., Shah,A.A., Sharma,A., Shen,Y., Spirohn,K., Tam,S.,
            Tejeda,A.O., Wanamaker,S.A., Twizere,J.C., Vega,K., Walsh,J.,
            Cusick,M.E., Xia,Y., Barabasi,A.L., Iakoucheva,L.M., Aloy,P., De
            Las Rivas,J., Tavernier,J., Calderwood,M.A., Hill,D.E., Hao,T.,
            Roth,F.P. and Vidal,M.
  TITLE     A proteome-scale map of the human interactome network
  JOURNAL   Cell 159 (5), 1212-1226 (2014)
   PUBMED   25416956
REFERENCE   2  (bases 1 to 1257)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474008.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_233456.4, XM_001069921.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ234867.1, EX492785.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132264
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1257
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..1257
                     /gene="C5h1orf50"
                     /gene_synonym="RGD1564804"
                     /note="similar to human chromosome 1 open reading frame
                     50"
                     /db_xref="GeneID:313551"
                     /db_xref="RGD:1564804"
     exon            1..94
                     /gene="C5h1orf50"
                     /gene_synonym="RGD1564804"
                     /inference="alignment:Splign:2.1.0"
     CDS             16..615
                     /gene="C5h1orf50"
                     /gene_synonym="RGD1564804"
                     /codon_start=1
                     /product="uncharacterized protein C1orf50 homolog"
                     /protein_id="NP_001101439.1"
                     /db_xref="GeneID:313551"
                     /db_xref="RGD:1564804"
                     /translation="MADPGVPDPFKRGTGNLGVQEAAGPGGALVELTPTPGGMALVSP
                     YHTHRVGDPLDLVALAEQVQKADEFIRANATNKLTVIAEQIQHLQDQARKVLEDARRD
                     ADLHHVACNMVKKPGNIYYLYQRESGQKYFSIISPQEWGAGCPHDFLGAYKLQHDMSW
                     TPYEDVEKQDAKISMMDKLLSQPMALPPGTEPTFQGLTH"
     exon            95..210
                     /gene="C5h1orf50"
                     /gene_synonym="RGD1564804"
                     /inference="alignment:Splign:2.1.0"
     exon            211..297
                     /gene="C5h1orf50"
                     /gene_synonym="RGD1564804"
                     /inference="alignment:Splign:2.1.0"
     exon            298..429
                     /gene="C5h1orf50"
                     /gene_synonym="RGD1564804"
                     /inference="alignment:Splign:2.1.0"
     exon            430..1257
                     /gene="C5h1orf50"
                     /gene_synonym="RGD1564804"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggctgaggtg ctgttatggc ggaccccggg gttcccgacc cgttcaaaag aggcacggga
       61 aatctggggg tgcaagaggc ggcgggtcct ggaggagccc tggtggagct caccccgacc
      121 cccggcggca tggctctggt gagcccctat cacacccacc gggtcgggga ccccttagac
      181 ctcgtggcgc tcgccgagca ggtgcagaag gctgatgaat tcatccgagc aaatgctact
      241 aacaagctga cagtcattgc tgagcaaatc cagcatttgc aagaccaagc taggaaggtg
      301 ctggaagatg ctcgcagaga cgctgacttg caccatgtgg cttgtaatat ggtgaaaaag
      361 cctggcaaca tttactatct ttaccagcgg gaaagtggcc agaagtactt ctccattatt
      421 tctccacagg aatggggagc aggctgtccc catgacttcc ttggtgccta caagctacag
      481 catgacatgt cgtggactcc atatgaagat gtggagaagc aggatgctaa aatcagcatg
      541 atggacaagt tactgagcca gcccatggcc ttgcccccgg gcactgagcc caccttccaa
      601 ggactgactc actgaggatg gctctgacta gcagccctca tgagaaaggc ctgagtgata
      661 cccacctcct gtccacattc tctccctggg gggtgggtga ggggactgtg ggtatttggg
      721 tgagtcatga actacttgga agacggtctt gaatgtagct gctgattttg ctgtcagttg
      781 ggatggtgag gaatcacaga actgagggat tttcttgggt ccactgatgc ccagtcagtt
      841 gttttccaag gactggtcag tgctttcctt cacctccagc tgttcctccc tttaagtcaa
      901 aacactggcg gaggaagagc cttttcccta gcaagttggt gagtcatttt ctaagaggaa
      961 ccatctgtct gtctatcttt tgtgggttgg tattgaagct gtcctcatag gtgctgccat
     1021 gctgatttca ggctgaccca gggcctgcag tgttgcctaa ggaggattga aaaacaacaa
     1081 acaaaaactt ggcctggcca ggtgagagtg ttgactggag cttcagtcct catggcaccc
     1141 tggtttgccc ttctgccctt ccgtccgagt gagactgact ggagactaaa gcagcggccc
     1201 ggcaggccac gtttggggag tcatcctaag ccctgcagaa gattagacct ggaagag
//
