LOCUS       XM_039111117            1942 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to human chromosome 1 open
            reading frame 141 (C5h1orf141), transcript variant X1, mRNA.
ACCESSION   XM_039111117
VERSION     XM_039111117.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1942
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1942
                     /gene="C5h1orf141"
                     /note="similar to human chromosome 1 open reading frame
                     141; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 ESTs, 2 Proteins, and 89%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:500513"
                     /db_xref="RGD:1562532"
     CDS             584..1942
                     /gene="C5h1orf141"
                     /codon_start=1
                     /product="uncharacterized protein C1orf141 homolog isoform
                     X1"
                     /protein_id="XP_038967045.1"
                     /db_xref="GeneID:500513"
                     /db_xref="RGD:1562532"
                     /translation="MTEKILEKFDALEEKARILAAIREKNSNWRLKKKPLITPMLFDH
                     HVKFGDTITPAAFKTVANITEDESNDLKKSKKSVSFKYKPKPRSDFEESDLRPPTLAT
                     VINDEESKLMEHKEENLKPSSTSLRFLKDKETGNTKPLPLPLPRSRHPSKKSAESSIL
                     SPTLNKVSNAGKKEKVSPPFTDQNESRAKKSTHSTDHSADSSRNGRKHRPEVNNLITK
                     ESELTRNDQARMTHPVKQNILFPLDCEDLLKDPKMKTIDLGPTETVHTSMEQNHASPI
                     IFYDTKYVQMLFQTKWFTPYALNYTKKNIVLEKNCEIVKTLFNDEPSTISKPESTKSV
                     AQQKRLRVLSGELAQKSISEKRKKKHDSLVSKKISPNPLYNLSQTFSSLSKRFVGYFD
                     KDVIQEKSDKADKYELFSKTKPPPTRKFTTLPIKYDSKPLRNILEIRKLNNITPLDNL
                     LG"
ORIGIN      
        1 gacagacctc tgcagatttc agaagtgagt acatctttcc ctctcccagt tgaagggaac
       61 atagtaaaaa ctcctgacca caatactacc attggctgct gaaactccag tacggagaca
      121 ggaggatgct gaacatggtg ttctccctca gcactgacag ggtacccgag gccttcctgt
      181 gggccttata atccagcgct ttcctttcag ttcccaaaac taaaatgata aacaagaatt
      241 tgatctaaaa gtcagcataa gtcagtgaag aaagtgggga tggaaaagaa gcatgaccat
      301 gaggagccac cgtgcattag actcagagtt gctcggtaag ggtaaatact aagtggctgt
      361 gaaatctgat ccattcctaa cgaaagagaa agttagtgta agtagagctg agggagacag
      421 acagaccgac agacaaatgc aggcttttga tcgcatcttg gcaagaacag cagaagatga
      481 aatggtctgt ggccggagaa gacactttgt gctgcaatta taaaaaaata aaaataaggg
      541 agatacacac acctggcctc taactggaat ttactgacaa aggatgacag aaaaaattct
      601 ggaaaagttc gatgccctgg aggagaaagc aaggatactt gcagccatca gggaaaagaa
      661 tagcaactgg cgtcttaaaa aaaagccttt gattacaccc atgctgtttg accatcatgt
      721 gaagtttgga gacacaatta ccccagctgc atttaagaca gtagcaaata tcacagaaga
      781 tgaatcaaat gatcttaaga agtcaaaaaa gtctgtgtct ttcaaatata agcctaaacc
      841 cagaagtgat tttgaagagt cagatttaag accacctact cttgcaacag ttataaacga
      901 tgaagaaagt aaattaatgg aacacaaaga agaaaatcta aaaccaagtt ctacatctct
      961 tcgttttctt aaagataaag agacaggaaa cacaaagccc ttgcctctgc cactgcctcg
     1021 gtctagacac ccgagtaaaa aatcagcaga gtcttcaatc ctgtctccca cactcaacaa
     1081 agtatccaat gctggtaaga aggaaaaggt ctctccccca tttacagacc agaatgaaag
     1141 cagagctaag aagtccacgc attccacaga ccactcagca gattctagta gaaatgggag
     1201 aaaacaccgt ccagaggtga ataatttgat tacaaaagaa agcgaattaa ccagaaatga
     1261 ccaagcaaga atgactcatc cagtcaaaca gaacatcttg tttcccctgg actgtgagga
     1321 tctactgaaa gatccaaaaa tgaagacaat tgaccttggt ccaacagaga cagtgcatac
     1381 ttctatggaa caaaaccacg caagtccaat aattttctat gacactaaat atgtacaaat
     1441 gctgttccag acaaaatggt ttacccccta tgctctgaat tatacaaaaa agaatattgt
     1501 tttagaaaaa aattgtgaaa tagtcaaaac tttatttaat gatgaaccaa gtactatttc
     1561 taaacctgaa agtactaagt ctgtagccca gcagaaacgg ttgcgagtcc tctctggtga
     1621 actggcccaa aagagtataa gcgagaaacg aaagaagaaa catgacagtc tggtttcaaa
     1681 gaaaatatct ccgaaccctc tttataattt atcccaaact ttttccagct taagcaaaag
     1741 atttgttggt tactttgata aagatgttat tcaagaaaag agtgataagg cagataaata
     1801 tgaactgttt tccaaaacaa aaccaccacc cacacgcaaa tttactacct tacctatcaa
     1861 gtatgactcc aagcctctga gaaatatact tgaaatacgt aaactaaaca acataactcc
     1921 actggataac cttctaggct ga
//
