LOCUS       NM_001134623            3034 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus similar to human chromosome 3 open reading frame
            20 (C4h3orf20), mRNA.
ACCESSION   NM_001134623 XM_001076570 XM_575608
VERSION     NM_001134623.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Apr 8, 2010 this sequence version replaced NM_001134623.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence because no single transcript was available for the
            full length of the gene. The genomic coordinates used for the
            transcript record were based on transcript alignments and
            orthologous data.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA5760383, SAMEA5760389
                              [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-57                JAXUCZ010000004.1  125989335-125989391
            58-719              JAXUCZ010000004.1  125989640-125990301
            720-860             JAXUCZ010000004.1  125991338-125991478
            861-977             JAXUCZ010000004.1  125992178-125992294
            978-986             JAXUCZ010000004.1  125992837-125992845
            987-1119            JAXUCZ010000004.1  125993200-125993332
            1120-1389           JAXUCZ010000004.1  125994239-125994508
            1390-1539           JAXUCZ010000004.1  125998036-125998185
            1540-1660           JAXUCZ010000004.1  125999433-125999553
            1661-1792           JAXUCZ010000004.1  126003475-126003606
            1793-1916           JAXUCZ010000004.1  126007655-126007778
            1917-2163           JAXUCZ010000004.1  126009043-126009289
            2164-2467           JAXUCZ010000004.1  126017735-126018038
            2468-2575           JAXUCZ010000004.1  126019422-126019529
            2576-2718           JAXUCZ010000004.1  126020620-126020762
            2719-2853           JAXUCZ010000004.1  126025592-126025726
            2854-3034           JAXUCZ010000004.1  126026216-126026396
FEATURES             Location/Qualifiers
     source          1..3034
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q34"
     gene            1..3034
                     /gene="C4h3orf20"
                     /gene_synonym="RGD1560289"
                     /note="similar to human chromosome 3 open reading frame
                     20"
                     /db_xref="GeneID:500258"
                     /db_xref="RGD:1560289"
     exon            1..57
                     /gene="C4h3orf20"
                     /gene_synonym="RGD1560289"
                     /inference="alignment:Splign:2.1.0"
     exon            58..719
                     /gene="C4h3orf20"
                     /gene_synonym="RGD1560289"
                     /inference="alignment:Splign:2.1.0"
     CDS             242..2950
                     /gene="C4h3orf20"
                     /gene_synonym="RGD1560289"
                     /codon_start=1
                     /product="uncharacterized protein C3orf20 homolog"
                     /protein_id="NP_001128095.2"
                     /db_xref="GeneID:500258"
                     /db_xref="RGD:1560289"
                     /translation="MNQVKSNRELYLQYSASAPKLLAHVSKLLIFCRNTGISIPKGIR
                     NIFEFTWEELISDPAVPTPSEIPDLVITLGTPTVVLAEVIPAQVLPMQKKQPPPGPPP
                     PLLLTTPSGGKPLAPRSASARLMPNGQDTLHKFQRQSIHLLTELLSLKMKAMVESASA
                     GANPLDITKRFVEASQLLHLNAKEMAFDCLTGTIGKSCLSSAQLGKESPMNISAMGVN
                     TPYQLVFQASTACLSFSLSTGKESRKRDIGGRAKAIDDVSSPPVRARTPPESTIIELP
                     DPCPEAREKLQDMCRHIEAERILWRGRNASCPMILRNYRSKIPSHLMLASKGESHHPL
                     TAGTQITASTLHQPSSQHAQMGRHSQEWRGPKKPIKLHYTFYDGSSFVYYPSGNIAML
                     QIPTCCRGKPITCLFNDIPNIFLALFNAEGLGCVYYNLKNSCPYVLVLDEEGGITNDQ
                     KGYIVHKWSWASKTETLLSLEYKVNEQMKLTVLGQDSISVTFTSMNETVTLSVSPKSC
                     PHTVLHDKRPVRRISTIDEKVSKINRGLVEIKKRFQKTVIQFMNSVLLAAGLFTLEYP
                     SPKKEDIEATRVKLKSGSNQDKMRNATLHQGETVTRTQPARPDSIVEDTVKEEYVPPS
                     LIRTRKKSSKVPVKVSRGKPREVRSPTRWAASPTDCPLVLRRLIRKEDIRAGCKCIVK
                     APLVSDLELERFLTAPRDPNQVLVFGIMSSQNPTCTAQLQWLLDTLYSHRQQGRSSPC
                     IQCHHDPYRLLRYDLDSPLQKDPPLMVKKFAVIHGMVLMFAGGKLLFGGCVLNGYGFS
                     KQNLLKQIFRAQQDCKLGYFLPDNYKFNMSTYLSILDDSESTKRPPSDEYEGSVSSVA
                     LVDKVEKEPSPPSEKVKPPEVEPQPFSKSRRSSKKSTSWKKSNSKK"
     exon            720..860
                     /gene="C4h3orf20"
                     /gene_synonym="RGD1560289"
                     /inference="alignment:Splign:2.1.0"
     exon            861..977
                     /gene="C4h3orf20"
                     /gene_synonym="RGD1560289"
                     /inference="alignment:Splign:2.1.0"
     exon            978..986
                     /gene="C4h3orf20"
                     /gene_synonym="RGD1560289"
                     /inference="alignment:Splign:2.1.0"
     exon            987..1119
                     /gene="C4h3orf20"
                     /gene_synonym="RGD1560289"
                     /inference="alignment:Splign:2.1.0"
     exon            1120..1389
                     /gene="C4h3orf20"
                     /gene_synonym="RGD1560289"
                     /inference="alignment:Splign:2.1.0"
     exon            1390..1539
                     /gene="C4h3orf20"
                     /gene_synonym="RGD1560289"
                     /inference="alignment:Splign:2.1.0"
     exon            1540..1660
                     /gene="C4h3orf20"
                     /gene_synonym="RGD1560289"
                     /inference="alignment:Splign:2.1.0"
     exon            1661..1792
                     /gene="C4h3orf20"
                     /gene_synonym="RGD1560289"
                     /inference="alignment:Splign:2.1.0"
     exon            1793..1916
                     /gene="C4h3orf20"
                     /gene_synonym="RGD1560289"
                     /inference="alignment:Splign:2.1.0"
     exon            1917..2163
                     /gene="C4h3orf20"
                     /gene_synonym="RGD1560289"
                     /inference="alignment:Splign:2.1.0"
     exon            2164..2467
                     /gene="C4h3orf20"
                     /gene_synonym="RGD1560289"
                     /inference="alignment:Splign:2.1.0"
     exon            2468..2575
                     /gene="C4h3orf20"
                     /gene_synonym="RGD1560289"
                     /inference="alignment:Splign:2.1.0"
     exon            2576..2718
                     /gene="C4h3orf20"
                     /gene_synonym="RGD1560289"
                     /inference="alignment:Splign:2.1.0"
     exon            2719..2853
                     /gene="C4h3orf20"
                     /gene_synonym="RGD1560289"
                     /inference="alignment:Splign:2.1.0"
     exon            2854..3034
                     /gene="C4h3orf20"
                     /gene_synonym="RGD1560289"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcttttatca gtaaactaca ggcagatctt ccacccttag gtcgctaact acaaaagaaa
       61 ctgatgactc aatgaccttt gagggtgact tctgcatgta cactccatct ttccccaaga
      121 cttctctgta ggtaagaggt gacccatctc ttcacttgtc agcgtgctga atctttacag
      181 ctgagtgtcc ctctcttttg agatggacag tgtcacctag cagtatgctt gcccagacga
      241 catgaaccag gtcaaaagta accgagaact gtacctgcaa tattcagcct cagcccccaa
      301 actgctggct cacgtctcga aactcctcat tttttgccga aacacaggca tttccatccc
      361 caaaggcatt aggaatattt ttgagttcac ttgggaggag ctcatcagtg accctgcagt
      421 gcccactcca tcggagattc cggatctggt gatcaccttg ggaactccta cagtggtgct
      481 tgcagaagtg atcccagcac aggtcctccc catgcagaag aagcagcccc cacctggccc
      541 accacctcca ctactgctca caacccccag tgggggcaag cccttggccc cccgctctgc
      601 ttctgctcga ctgatgccca atggccaaga taccctgcac aagttccagc ggcaatccat
      661 ccacctgttg acagagctgc tttccctgaa gatgaaggcc atggtggagt ctgcctctgc
      721 aggtgccaac cctctggaca tcacgaagcg ctttgtggag gccagccagc tactccacct
      781 caatgcaaag gagatggcct ttgactgtct gactggaact atcgggaaaa gctgcctcag
      841 ctcggctcag ctggggaaag aatcccccat gaacatttct gctatgggag tgaacacacc
      901 ttaccagctg gtcttccagg catccacagc ctgtctgagc ttctccctct ccacaggaaa
      961 ggaaagcagg aagagagata ttggaggcag ggcaaaggct atagacgatg tctcgtctcc
     1021 accggtccga gcccgaaccc ctcctgaaag cactattatt gagttgcctg acccctgtcc
     1081 tgaggcccgg gaaaagctgc aggatatgtg tcgccacata gaagccgaaa ggatcttgtg
     1141 gagagggagg aatgcctcct gccccatgat tttacgcaac tacaggtcaa agataccctc
     1201 tcatttaatg ttggcctcca agggggaatc tcaccatcct ctcactgcgg gaactcagat
     1261 tactgcttcc actcttcacc agccttccag ccagcatgct caaatgggcc gccattctca
     1321 agagtggagg gggcccaaga agcccatcaa gctgcattac actttctatg atggctcctc
     1381 cttcgtttac tatccctccg gaaacatcgc catgcttcag attcccacgt gctgcagagg
     1441 gaaacccatc acctgcctct ttaatgacat acctaatatc ttcctggctc tgttcaatgc
     1501 tgaaggcctg ggctgtgttt actacaacct gaagaacagc tgtccatacg tcttggtttt
     1561 ggatgaagaa ggtgggatca caaatgacca aaagggctac atagtccaca agtggagctg
     1621 ggccagcaag accgagacat tgctctctct ggagtacaag gtgaatgaac aaatgaagct
     1681 aacagtcttg gggcaggact ccatctctgt caccttcacc tccatgaatg agacggtaac
     1741 actcagtgtg tcgcccaaaa gctgtcccca taccgtgctg cacgacaaac ggccagttcg
     1801 cagaatcagc accattgatg aaaaggtgtc caagataaac agaggcctgg ttgagatcaa
     1861 gaagcggttt cagaagactg tgattcagtt tatgaactct gtgctgctgg cagcaggtct
     1921 gttcacctta gagtatccct ccccaaaaaa agaagacata gaagctactc gggtcaagtt
     1981 gaaatccggg tctaatcaag ataagatgcg gaatgcaact ttacaccaag gagaaaccgt
     2041 tacacgaacc cagccagccc gaccagactc catagttgag gacacagtga aggaggaata
     2101 tgtaccccca tccttgatcc gtactcgaaa gaagagcagc aaagtccctg tcaaagtctc
     2161 aagagggaag ccccgagagg tgcgcagccc tactaggtgg gcagcctcac ccactgactg
     2221 cccactggtg ctgcggaggc tcattcgcaa ggaagacatc cgggctggct gcaaatgtat
     2281 cgtgaaggca cccctggtat ccgacttgga gctggagcgc ttcctgactg caccccgaga
     2341 ccccaaccaa gtgctggtat ttgggataat gtccagccag aaccccacct gcaccgcaca
     2401 gctgcagtgg ctgctggata cactgtatag ccatcggcag cagggccgct cttcaccctg
     2461 catccagtgc caccatgacc cttaccgcct gctgcggtat gacctggaca gccccttgca
     2521 gaaggatccg cccctaatgg tgaagaagtt tgctgtgata cacgggatgg ttttgatgtt
     2581 tgctgggggc aagctcctct ttgggggctg tgtactaaat ggctatggct tcagcaagca
     2641 gaatctgctg aaacagatct tccgggctca acaggattgc aagttgggct acttcctgcc
     2701 agacaactac aaattcaaca tgtcaactta tctctcgatc ctggatgatt ctgagtcaac
     2761 taaaagaccc ccatctgatg aatacgaagg aagtgtctct tcggtggcac ttgtggacaa
     2821 agtagaaaaa gagccttctc ccccctctga gaaggtgaaa ccgcctgaag tagagccaca
     2881 gcctttcagc aaatcgagga ggagcagtaa gaagagcact agctggaaga agtcaaactc
     2941 taagaagtga tgttgggata gccagcaatg ccctccccac acccagcccc acctcctggt
     3001 ctcccacccc cgttaataaa tgcgagtgcc tcca
//
