LOCUS       NM_001399581            1302 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 9 open reading frame
            78 (C3h9orf78), mRNA.
ACCESSION   NM_001399581 XM_006233915
VERSION     NM_001399581.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1302)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1302)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jan 12, 2022 this sequence version replaced XM_006233915.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.11145.1,
                                           SRR26643296.8315.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840108 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-138               JAXUCZ010000003.1  34670145-34670282   c
            139-198             JAXUCZ010000003.1  34669807-34669866   c
            199-250             JAXUCZ010000003.1  34668957-34669008   c
            251-321             JAXUCZ010000003.1  34668090-34668160   c
            322-399             JAXUCZ010000003.1  34666970-34667047   c
            400-597             JAXUCZ010000003.1  34665125-34665322   c
            598-734             JAXUCZ010000003.1  34662988-34663124   c
            735-833             JAXUCZ010000003.1  34662804-34662902   c
            834-1302            JAXUCZ010000003.1  34662011-34662479   c
FEATURES             Location/Qualifiers
     source          1..1302
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p12"
     gene            1..1302
                     /gene="C3h9orf78"
                     /gene_synonym="RGD1305178"
                     /note="similar to human chromosome 9 open reading frame
                     78"
                     /db_xref="GeneID:311855"
                     /db_xref="RGD:1305178"
     exon            1..138
                     /gene="C3h9orf78"
                     /gene_synonym="RGD1305178"
                     /inference="alignment:Splign:2.1.0"
     CDS             56..925
                     /gene="C3h9orf78"
                     /gene_synonym="RGD1305178"
                     /note="uncharacterized protein C9orf78 homolog"
                     /codon_start=1
                     /product="telomere length and silencing protein 1 homolog"
                     /protein_id="NP_001386510.1"
                     /db_xref="GeneID:311855"
                     /db_xref="RGD:1305178"
                     /translation="MRITGKTFRRRRADSESEEDEQESEEVRLKLEETREVQNLRKRP
                     NGVSAAALLVGEKVQEETTLVDDPFQMATGGMVDMKKLKERGKDKVSEEEDLHLGTSF
                     SAETNRRDEDADMMKYIETELKKRKGIVEQEEQKAKPKNAEDCLYELPENIRVSSAKK
                     TEEMLSNQMLSGIPEVDLGIDAKIKNIISTEDAKARLLAEQQNKKKDSETSFVPTNMA
                     VNYVQHNRFYHEELNAPIRRNKEEPKARPLRVGDTEKPEPERSPPNRKRPANEKATDD
                     YHYEKFKKMNRRY"
     exon            139..198
                     /gene="C3h9orf78"
                     /gene_synonym="RGD1305178"
                     /inference="alignment:Splign:2.1.0"
     exon            199..250
                     /gene="C3h9orf78"
                     /gene_synonym="RGD1305178"
                     /inference="alignment:Splign:2.1.0"
     exon            251..321
                     /gene="C3h9orf78"
                     /gene_synonym="RGD1305178"
                     /inference="alignment:Splign:2.1.0"
     exon            322..399
                     /gene="C3h9orf78"
                     /gene_synonym="RGD1305178"
                     /inference="alignment:Splign:2.1.0"
     exon            400..597
                     /gene="C3h9orf78"
                     /gene_synonym="RGD1305178"
                     /inference="alignment:Splign:2.1.0"
     exon            598..734
                     /gene="C3h9orf78"
                     /gene_synonym="RGD1305178"
                     /inference="alignment:Splign:2.1.0"
     exon            735..833
                     /gene="C3h9orf78"
                     /gene_synonym="RGD1305178"
                     /inference="alignment:Splign:2.1.0"
     exon            834..1302
                     /gene="C3h9orf78"
                     /gene_synonym="RGD1305178"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agaggttcct tgtacctcgc gtctggtaac gcagcgccga gggtcttgtt ccgctatgcg
       61 gatcaccggg aagacattcc gtcggcgccg cgctgactcg gagtcggagg aggatgaaca
      121 agaatcagag gaggttcggc taaaactgga agaaacgcga gaggtgcaga acttgcggaa
      181 gaggccaaat ggggtgagtg cggctgccct gctggtggga gagaaggttc aagaggagac
      241 tactctggtg gatgatcctt tccaaatggc gacaggtggc atggtggaca tgaagaaact
      301 gaaggagcgt ggcaaagaca aggtcagtga agaggaggat ctgcacctgg ggacatcttt
      361 ttctgcagag accaaccgga gggatgagga tgcagacatg atgaagtaca ttgagacgga
      421 gctgaagaag aggaagggga ttgtggagca agaggaacag aaggccaagc ccaagaatgc
      481 tgaggactgc ctctatgagc tgccagagaa tatccgagtc tcctctgcca agaaaactga
      541 ggagatgctg tccaaccaga tgctgagtgg catccctgag gtggacctgg gcatagacgc
      601 taaaataaaa aacatcattt ccacggagga tgccaaggcc cggctgctgg cagagcagca
      661 gaacaagaag aaggacagcg agacatcttt tgtgcccacc aacatggctg tgaactatgt
      721 gcagcacaac cgcttttatc atgaggagct taatgcaccc atccgaagaa acaaagaaga
      781 acccaaagcc cggcccttac gagtgggtga cacagagaag ccagagcccg agcggtcccc
      841 tcccaaccgc aagcgtcctg ctaatgagaa ggccacagac gactaccact atgagaagtt
      901 caagaagatg aacaggcgct actaaggcag cggtaggggc tggattaaca attcacgtac
      961 acgtgtacac acacacacac acacacacac acacacacac acacacacgt tctcttgcat
     1021 agaacctgct tattagctct tgaagttgcc catcagacag tgcttctgct cagctgctgg
     1081 atttccgttt tggttttggt cggagactgt ggctcccatg tatcctaggc cttgaactcc
     1141 ctcctccctc ctactggggt tttagaggcc ccacactcct ggctggcatt ttaagcacta
     1201 actttgtaac ttttgaaaga aaacaatgtg tctatgtcta tattgtttcc tacctggagc
     1261 aaactatcct taagaatatt attaaataat ttgtaaatat gt
//
