LOCUS       NM_001100979            1535 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus similar to human chromosome 9 open reading frame
            50 (C3h9orf50), mRNA.
ACCESSION   NM_001100979 XM_001079677 XM_231131
VERSION     NM_001100979.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1535)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC127535.1.
            
            On or before Aug 12, 2007 this sequence version replaced
            XM_231131.4, XM_001079677.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC127535.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1535
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p12"
     gene            1..1535
                     /gene="C3h9orf50"
                     /gene_synonym="RGD1311084"
                     /note="similar to human chromosome 9 open reading frame
                     50"
                     /db_xref="GeneID:311852"
                     /db_xref="RGD:1311084"
     exon            1..750
                     /gene="C3h9orf50"
                     /gene_synonym="RGD1311084"
                     /inference="alignment:Splign:2.1.0"
     CDS             137..1405
                     /gene="C3h9orf50"
                     /gene_synonym="RGD1311084"
                     /codon_start=1
                     /product="uncharacterized protein C9orf50 homolog"
                     /protein_id="NP_001094449.1"
                     /db_xref="GeneID:311852"
                     /db_xref="RGD:1311084"
                     /translation="MFRRQPMDRTPAYKPKGYPDGSTRRRALQQLQMLLPTLDGRAGR
                     GADGAWWRDRKSQHLSSPSPESPYASRGRGALRALLLPPLLQSSLTREAGARGNRQPA
                     DRDNPDALGTLLGELLPNKFRHFLHQLRAKIAEPEADREAAGVGWGAESWGPKREPAP
                     SHWAVLPLFLSFLLPAPSAPQYSSSPSEHCPASRCSSSSFLPDSWDQPLNWDDSFREK
                     TTLGLPKGEFVRAKKAHPPSGEGSRPRRRYCPFRVRFADETLQDTALRYWERNRAVRQ
                     NILPSEQTALPAVSVSERVLGSVGRWLDSLPRALQPRVQDTAASSSCWNCPRESAQEP
                     QLYLSEDATVSSRLPFISRATAPRPRGGLRTFLDTPNNPEQVGKSPCPGSQKLESFLP
                     SLVLQTVLKQGRPKGYQLLLPTTNRQQAHR"
     exon            751..843
                     /gene="C3h9orf50"
                     /gene_synonym="RGD1311084"
                     /inference="alignment:Splign:2.1.0"
     exon            844..956
                     /gene="C3h9orf50"
                     /gene_synonym="RGD1311084"
                     /inference="alignment:Splign:2.1.0"
     exon            957..1122
                     /gene="C3h9orf50"
                     /gene_synonym="RGD1311084"
                     /inference="alignment:Splign:2.1.0"
     exon            1123..1297
                     /gene="C3h9orf50"
                     /gene_synonym="RGD1311084"
                     /inference="alignment:Splign:2.1.0"
     exon            1298..1511
                     /gene="C3h9orf50"
                     /gene_synonym="RGD1311084"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcctgccag agccggcttc tgctgcccct taccggcgct atggcctgcg ggctggcatt
       61 cgatcttcct gcggccccgc tcgcccctgt gcgtccccgg ggcgcgaagg tgtcctgagc
      121 tgagctctga ctcaggatgt tccggcgcca gcccatggac aggaccccgg cttacaagcc
      181 caaggggtat cccgacgggt ccacccgacg ccgcgccctt cagcagctac agatgctgct
      241 gcccacgctc gacggccgtg cggggcgagg cgcagacggc gcgtggtggc gggaccgcaa
      301 gtcccagcac ctgtcttccc cgtcccccga gtccccgtac gcttcgcggg gccgtggggc
      361 cctgcgtgcg ctgctgctgc cgccgctgct gcagagcagc ttgacccggg aggcgggggc
      421 tcgggggaac cggcagccgg cggaccggga caaccctgac gccctgggca cgctgctggg
      481 ggaactgctg cccaacaagt tccgccactt ccttcaccag ctgcgcgcca agatcgcaga
      541 gccagaggcg gaccgtgagg ccgcgggggt ggggtggggt gcagagtctt ggggtcccaa
      601 gcgagaaccc gctccatctc actgggctgt cctccccctt ttcctttcct tcctcctccc
      661 agcaccctca gcgccacagt actccagcag tccatccgag cactgcccag cttctcggtg
      721 ttccagcagc tctttcctcc cagactcgtg ggaccaacca ttgaactggg acgacagttt
      781 tagagagaag actaccctgg ggctcccaaa aggtgaattc gtcagagcca aaaaggccca
      841 tcccccctct ggagaaggct caagaccccg cagacggtat tgtcctttcc gggtgcgatt
      901 cgcagacgag accttgcagg atacagcact ccggtactgg gaacgtaacc gggcagtccg
      961 gcagaatatc ttaccgagcg agcagacggc tttgccagct gtatctgtgt cagagcgagt
     1021 gcttgggagt gttgggagat ggttggacag tctgcccaga gcccttcaac ccagggtcca
     1081 agacaccgcg gctagctcct catgctggaa ctgcccccgc gagtcagctc aggaaccaca
     1141 gctctacctt tctgaggatg ccaccgtgag cagccgccta cccttcatct ccagggccac
     1201 cgccccaagg ccaaggggag gcctaagaac cttcctggac acccctaaca atccggagca
     1261 ggtgggcaaa tcgccctgtc ccgggagcca gaagctggaa tcctttctgc ccagtttggt
     1321 gctgcagacc gttctaaagc aaggccgccc taagggctac cagctccttc tgccgaccac
     1381 aaaccggcag caggctcaca ggtgaatgcc tgccagaggc ccccctgctc agaagtgtac
     1441 ccatgccagg caatgaggag agtgcttctt cgccccacaa ataaacacac ctcccaggtg
     1501 gctgggatgg aaaaaaaaaa aaaaaaaaaa aaaaa
//
