LOCUS       NM_001419507             594 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 1 open reading frame
            54 (C2h1orf54), transcript variant 3, mRNA.
ACCESSION   NM_001419507 XM_039103794
VERSION     NM_001419507.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Apr 4, 2023 this sequence version replaced XM_039103794.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FM099708.1, SRR26360186.2461826.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676807 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-69                JAXUCZ010000002.1  186123577-186123645 c
            70-156              JAXUCZ010000002.1  186120409-186120495 c
            157-215             JAXUCZ010000002.1  186119472-186119530 c
            216-401             JAXUCZ010000002.1  186118309-186118494 c
            402-503             JAXUCZ010000002.1  186114976-186115077 c
            504-594             JAXUCZ010000002.1  186113922-186114012 c
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..594
                     /gene="C2h1orf54"
                     /note="similar to human chromosome 1 open reading frame
                     54"
                     /db_xref="GeneID:120093057"
                     /db_xref="RGD:41092593"
     exon            1..69
                     /gene="C2h1orf54"
                     /inference="alignment:Splign:2.1.0"
     CDS             24..500
                     /gene="C2h1orf54"
                     /note="isoform 3 precursor is encoded by transcript
                     variant 3; uncharacterized protein C1orf54 homolog;
                     chromosome 2 C1orf54 homolog"
                     /codon_start=1
                     /product="uncharacterized protein C1orf54 homolog isoform
                     3 precursor"
                     /protein_id="NP_001406436.1"
                     /db_xref="GeneID:120093057"
                     /db_xref="RGD:41092593"
                     /translation="MDVLFIALLVAPLVLGQEYEDEEQLEEVDYYQVSYYYYTVTPNY
                     DDFNVNFTVDYSAFESEDRLNSLNEEVTTTEAVETSASSYSLHTEPVDHQNPVTTKPV
                     TMKPVTTKPVTTKQVTTKQVTTESQSPDQNDAISALQSPVSCLLLWILLQGGVHFM"
     exon            70..156
                     /gene="C2h1orf54"
                     /inference="alignment:Splign:2.1.0"
     exon            157..215
                     /gene="C2h1orf54"
                     /inference="alignment:Splign:2.1.0"
     exon            216..401
                     /gene="C2h1orf54"
                     /inference="alignment:Splign:2.1.0"
     exon            402..503
                     /gene="C2h1orf54"
                     /inference="alignment:Splign:2.1.0"
     exon            504..594
                     /gene="C2h1orf54"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acagtgatag tgcaaaatcc agaatggatg tcctctttat agccctcctt gtggcaccac
       61 ttgtcctggg gcaggaatat gaggatgaag aacagctgga agaggttgat tactatcaag
      121 tgtcgtatta ttattacaca gtgaccccta attatgatga ctttaatgta aacttcactg
      181 ttgattactc cgcgtttgag tcagaggata ggttgaacag tttgaatgag gaggtaacaa
      241 caacagaagc ggtggagact agcgcttcct cgtacagtct tcataccgaa cctgtggacc
      301 atcagaatcc tgtaaccacg aaaccagtga ctatgaaacc agtgaccacg aaaccagtga
      361 ctaccaaaca agtgactaca aaacaagtga ccacagaatc acagagtcca gatcagaatg
      421 atgccatatc cgctctgcag agtcctgtgt cctgtcttct gttatggatc ctccttcaag
      481 gaggggtgca ttttatgtag aaggtgagag aaggctgcta tgactcttcg gactagaatt
      541 ctttggcaag aatttggatg gaaaataaaa aattaagttt tgcctgcttc ttaa
//
