LOCUS       NM_001399017            2211 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus C2 calcium-dependent domain containing 4A
            (C2cd4a), mRNA.
ACCESSION   NM_001399017 XM_008766406
VERSION     NM_001399017.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2211)
  AUTHORS   Warton,K., Foster,N.C., Gold,W.A. and Stanley,K.K.
  TITLE     A novel gene family induced by acute inflammation in endothelial
            cells
  JOURNAL   Gene 342 (1), 85-95 (2004)
   PUBMED   15527968
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Dec 29, 2021 this sequence version replaced XM_008766406.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643297.28881.1, DN948917.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06680448, SAMN09345330
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-86                JAXUCZ010000008.1  77350836-77350921   c
            87-2211             JAXUCZ010000008.1  77348161-77350285   c
FEATURES             Location/Qualifiers
     source          1..2211
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..2211
                     /gene="C2cd4a"
                     /gene_synonym="Fam148a; Nlf1"
                     /note="C2 calcium-dependent domain containing 4A"
                     /db_xref="GeneID:691703"
                     /db_xref="RGD:1596010"
     exon            1..86
                     /gene="C2cd4a"
                     /gene_synonym="Fam148a; Nlf1"
                     /inference="alignment:Splign:2.1.0"
     exon            87..2211
                     /gene="C2cd4a"
                     /gene_synonym="Fam148a; Nlf1"
                     /inference="alignment:Splign:2.1.0"
     CDS             132..1154
                     /gene="C2cd4a"
                     /gene_synonym="Fam148a; Nlf1"
                     /note="nuclear localized factor 1; family with sequence
                     similarity 148, member A"
                     /codon_start=1
                     /product="C2 calcium-dependent domain-containing protein
                     4A"
                     /protein_id="NP_001385946.1"
                     /db_xref="GeneID:691703"
                     /db_xref="RGD:1596010"
                     /translation="MWCLERLLRDRDGFLPGRARRSKARSSAACANVLTPDRIPEFCI
                     PPRLEPSTASAALRDAWAADVESDDGAGLTDWDPRSQAALSLPHLPRARTVYGFCALL
                     ESPHTRRKESLFLGHLGAPVRRPGLRHRTHTYASPHRVSDAPRPAPGDPDAARVPTPT
                     PAPSRRRLLHSPGRLLSRALRAPRGPARARPGSRGDEHERAASCAPPAPTRPDPQRLQ
                     AEANVALGRGGCTLRLAAEYCPRSACLRLRLLRAEGPAAVLEPRALGCRLSLVLRPSG
                     QQRASVVRRSRKAALDQDCCFDGLPEEQLRRLAVRIKAESKGRGLERRRPLGQGELLL
                     GSLLLL"
ORIGIN      
        1 ggaacaccag ggatcaactc tgccgcgcgc tctttgaatt tctctgcgtc tctccagttg
       61 gaaaaccatc tgactctgaa caccaggcag cttcgaacag aggatcaccc ggttctgaca
      121 ctagcggcca gatgtggtgt ctggagcggc tcttgcggga ccgagatggg tttctcccgg
      181 ggcgtgcccg ccgctccaag gctcgttcgt ccgcggcgtg cgcaaacgtg ctcactccag
      241 accgcatccc agagttttgc atcccgccga ggttggagcc tagcacggct tcggctgcgc
      301 tgcgcgatgc ctgggctgcg gacgtggagt ccgacgatgg cgcgggcctc acggactggg
      361 acccgcgctc tcaggctgcg ctctcgctgc cgcacctgcc ccgcgcgcgt accgtttacg
      421 gcttctgtgc gctgctcgag agcccgcaca cgcgccggaa ggagtcgctc ttcctcggcc
      481 acctaggtgc cccggtccgc cggcccgggc ttcgccaccg cacacacacc tatgcgagcc
      541 cgcaccgagt ctcggacgct ccgcgccctg cgccgggtga cccagacgcc gcccgggttc
      601 cgacgcccac tcccgctcct agcagacgcc gcctcctaca ctcccccggt aggctgctga
      661 gccgcgcgct gcgggccccc cgcggtccgg ccagagcgcg cccggggtcc cgcggcgacg
      721 agcacgagcg cgccgcctcc tgcgcgcccc cggcccccac ccgcccggat ccccagcgcc
      781 tgcaggccga ggccaacgtg gctctgggcc gcgggggttg cacgctgcgc ctggcggccg
      841 agtactgtcc gcgcagcgcc tgcctccgcc tccgcctgct gcgcgctgag ggcccggccg
      901 cggtgctcga gccccgcgcc ctgggctgtc gcctcagcct ggtgctgcgg ccgtccggcc
      961 agcagcgcgc cagtgtggtc cgccgcagcc gcaaggccgc cctggaccag gactgctgct
     1021 tcgacgggct cccggaggag caactgcgcc gcctggcggt gcgcatcaag gccgagagca
     1081 agggccgcgg gctggagcgc agacgaccac tgggccaggg cgagctgctg ctgggctctc
     1141 tgctactgct ctgagcgcgg cttccctggc gtcctggaca cctaaggtcg cttagtcatg
     1201 agatgcacag agactcttgg cccagggaca cttgcagcct tttggtcctg gaacacttgc
     1261 agcttcttgg ccctgagaca ctcttaggtc ctggcacact ttcagcctct tggctcttgg
     1321 acagtgactg acagccattt gtacaaaata aacatgtgtt catttttcta atcagggctt
     1381 tgtttcgggc caattctggc agagatgatc ctggactatc acagtaacat atgtagcttc
     1441 tttttgtgtg ggcaccttaa aaatttttgt tgagcaatgg ggtagtgtgg ttgagcagtg
     1501 ttccccacta tagacagcaa ttgaacttaa tgtgttcaca cattccaacg ggaaaatata
     1561 gttaatgtcg tccagtgtta gaccagcctc gttttaaaag ttagttcatt ccatggcatc
     1621 ctttgagact gatagtgtca gttacttaga ttgcgttaag atgttacata agaaaggcca
     1681 agggtcttag gatgaatggg taaaggtgct tgccaccaag tctcatcgcc ataactggga
     1741 tcgagtgagg attgtgggac cttcgtgatg gaagaagagg aaaagttcct gcaagctttc
     1801 ctctggtgtg actcacccca accccagtag taggcacggc tattcccatc ttgcagatga
     1861 gaatactgag gcacaaaaat aaagaaaatt tggggtttga atgtaggaca tcagtattaa
     1921 aatgcttgcc tgcggattgg ggtatagctc agttggtaca gtgcttgcct agcacatacg
     1981 aagtcctgag ttccatcccc agaactgtat gaatcttagg tccttttaac atgtacctgt
     2041 agtcacaaca ctgggaggcg gcagcagatg tgtcagaagt tcaaggccat tgtcagctat
     2101 acagggagtt aaaaggcagc atatgctata tgagagccca cgcctgaaat aaataaataa
     2161 ataaataaat aaataaataa ataaataaat aaataaataa tatacaccct c
//
