LOCUS       NM_001007737            1372 bp    mRNA    linear   ROD 23-APR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 9 open reading frame
            85 (C1h9orf85), mRNA.
ACCESSION   NM_001007737 XM_342034
VERSION     NM_001007737.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1372)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 1372)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC079346.1.
            
            On Nov 29, 2004 this sequence version replaced XM_342034.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079346.1, BC093390.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1372
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q51"
     gene            1..1372
                     /gene="C1h9orf85"
                     /gene_synonym="RGD1359158"
                     /note="similar to human chromosome 9 open reading frame
                     85"
                     /db_xref="GeneID:361740"
                     /db_xref="RGD:1359158"
     exon            1..141
                     /gene="C1h9orf85"
                     /gene_synonym="RGD1359158"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..507
                     /gene="C1h9orf85"
                     /gene_synonym="RGD1359158"
                     /codon_start=1
                     /product="uncharacterized protein C9orf85 homolog"
                     /protein_id="NP_001007738.1"
                     /db_xref="GeneID:361740"
                     /db_xref="RGD:1359158"
                     /translation="MSSQKGNVTRSRPQKHQNTFTFKNDKFDKSVQTKKINAKLHDGV
                     CQRCKEVLEWRVKYSKYKPLSKPKKCVKCLQKTVKDSYHIMCRPCACKLEVCAKCGKE
                     EEIVIPFNKEPEPSENTESEGSNHRRSCKRKEDSDEDLDAESDSEGEDEDTQA"
     exon            142..248
                     /gene="C1h9orf85"
                     /gene_synonym="RGD1359158"
                     /inference="alignment:Splign:2.1.0"
     exon            249..362
                     /gene="C1h9orf85"
                     /gene_synonym="RGD1359158"
                     /inference="alignment:Splign:2.1.0"
     exon            363..1348
                     /gene="C1h9orf85"
                     /gene_synonym="RGD1359158"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttaagggctg caccaactta tggtgcttgt gttttggtga tgagttccca gaaaggcaac
       61 gtgactcggt cccggcctca gaagcaccag aatacgttca ccttcaaaaa tgacaagttt
      121 gataagagtg ttcagaccaa gaaaattaat gcaaaacttc atgatggagt atgtcagcgt
      181 tgcaaagaag ttcttgaatg gcgtgtaaaa tacagcaaat acaaaccact gtcaaagcct
      241 aagaaatgtg ttaaatgttt acagaagaca gtaaaggact cttaccacat aatgtgtaga
      301 ccatgtgcct gcaaacttga agtttgtgca aaatgtggaa aggaagaaga aattgttatt
      361 ccgtttaata aagaaccaga accttcagaa aatactgaaa gtgaaggttc caaccataga
      421 agaagctgca aacggaagga agacagtgat gaggacttag atgctgagtc tgactcagag
      481 ggcgaggatg aggacactca ggcctgactg cacctcacgt gcagagggcg tcggcaaagg
      541 ctgttccagt aggcagaact ggctcaggag caacgtcagt cacttacaac atttgagtat
      601 caggttttca cagtaacaca agctgcatat gcagaatatg tgtgggcaca ccatggcatg
      661 tcgtataaaa cctatagaaa ttgtttagaa aaacatatta cctaatgtgt taagaattgg
      721 tggttgtatc agaactctct catggaaaac taagatgact agctcagagg acacttctgg
      781 agcctgacct cggtgtatga cttctttagc aaaagtcccc ttaaatctta ccaagcaaac
      841 cgttacacac acacacacac acacacacac acaatcttat gtaatgattt tccttcaaaa
      901 atgtttttat atacttcatc ccattttttt taaccttttc caggtttgga aatatatttt
      961 tagaaaaatg catagactgt atagttacta tctagaaagg aacatccagc attcatactg
     1021 gagtggagac actcgcagtc tcagaagccc ctgtgaagtt cttccccatc cgcttatcct
     1081 tcccagattc catcatcctg agttgtcact ttactgtcag gctttcactg taatcagtgt
     1141 cagttagctt catgtgattg ttgaagtctg tgcccctgtg tgtaaaaccc caaagctaca
     1201 ggaagtggct ctctttaact agattctgaa ttttaatgtt ttactgtttt ctttgtgcct
     1261 taagttctac taatgtatgt atgattcata tgtacatgta tgtgggtgta tatatttgct
     1321 gagccattgc aataaatgag aagccatgaa aaaaaaaaaa aaaaaaaaaa aa
//
