LOCUS       XM_017590323             695 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus similar to human chromosome 9 open
            reading frame 57 (C1h9orf57), transcript variant X2, mRNA.
ACCESSION   XM_017590323
VERSION     XM_017590323.2
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086019) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Aug 3, 2024 this sequence was replaced by
            NM_001432810.1.
            
            On Jan 21, 2021 this sequence version replaced XM_017590323.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..695
                     /gene="C1h9orf57"
                     /note="similar to human chromosome 9 open reading frame
                     57; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 EST, 51 long SRA reads, 2 Proteins"
                     /db_xref="GeneID:100911842"
                     /db_xref="RGD:6490675"
     CDS             145..498
                     /gene="C1h9orf57"
                     /codon_start=1
                     /product="uncharacterized protein C9orf57 homolog isoform
                     X2"
                     /protein_id="XP_017445812.1"
                     /db_xref="GeneID:100911842"
                     /db_xref="RGD:6490675"
                     /translation="MLAGPVLSSTVLWPADLRMRKTAIAAIFILSCLVSDVGGVICKF
                     CNLSIPFHGCLLDFGTCRTKPGQYCIKEILTKGGIQWYSVKGCTEDKSECFKRIIRNY
                     EIRSSHCCHRPLCNF"
     polyA_site      695
                     /gene="C1h9orf57"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 cttttcctgt ctcaactgtt tagagtctag aggatcaggc cgttggtttc agttacagca
       61 aaccacattc cactagagac tttaacttgt gatcaggctt tgtaggaagt tcagacaaga
      121 aaaattgcca ccagagaaga agacatgttg gctggacctg tcctgtcttc taccgtcctg
      181 tggcctgcag atctaagaat gagaaagact gccatcgctg ccatttttat cctgtcctgc
      241 cttgtaagtg atgttggcgg tgtgatttgc aagttctgca atctctccat cccctttcat
      301 ggatgtttgc tggactttgg aacctgtaga acaaagcctg gtcagtattg cataaaagag
      361 atcctcacta aagggggaat ccagtggtat tcagttaaag gctgcactga ggacaaatcg
      421 gagtgcttta agaggattat aaggaactat gagatccgct cttctcattg ctgccaccgt
      481 cccctgtgca acttctgagg aagtggctat atccgtgtta ttgactagtc agtcatttct
      541 gaagcctggc ctagtgtgat ggcagcttct gtctcggagc catggccaga agttgagttt
      601 agcttctctg tgtccgtatc ccgccccagc atctcacaag aactctgtat tagcttcatt
      661 tctgttgcca taataaagtg ttctgatgaa gagaa
//
