LOCUS       NM_001024293            1704 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus similar to human chromosome 9 open reading frame
            40 (C1h9orf40), mRNA.
ACCESSION   NM_001024293 XM_574637
VERSION     NM_001024293.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1704)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 1704)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC082069.1.
            
            On May 27, 2005 this sequence version replaced XM_574637.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC082069.1, EV766568.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1704
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q51"
     gene            1..1704
                     /gene="C1h9orf40"
                     /note="similar to human chromosome 9 open reading frame
                     40"
                     /db_xref="GeneID:499331"
                     /db_xref="RGD:1563237"
     exon            1..443
                     /gene="C1h9orf40"
                     /inference="alignment:Splign:2.1.0"
     CDS             99..599
                     /gene="C1h9orf40"
                     /codon_start=1
                     /product="uncharacterized protein C9orf40 homolog"
                     /protein_id="NP_001019464.1"
                     /db_xref="GeneID:499331"
                     /db_xref="RGD:1563237"
                     /translation="MAKRRAAEPLTFRVPWKRLLLSDFPEEPPLWVPPSGAARPLKRQ
                     GDAGTMAEPASAPRKRRGGGDDEPELQGRGLEPGEPPPGEQGEPQVSRAAGGGDRVES
                     AGSPQGADEVHSQHNEDFWQYNTFQYWRNPLPPIDLAALEDVSANSLTETLEDKNEGV
                     EIDMES"
     exon            444..1676
                     /gene="C1h9orf40"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgtgttgcg gctccctcaa cgtccggccc accctcggga cgtcccgagc tcagtgccac
       61 cctccacctg ccgcccacgc gacccgcatc cctggcccat ggccaagcgg cgtgcggctg
      121 agccgctcac gttccgcgtg ccttggaagc ggctcctgct cagcgacttc cccgaggagc
      181 cgccgctctg ggtcccgccg tctggggcgg ctcggcccct caagcgccag ggggacgcgg
      241 ggaccatggc cgaacctgcg tctgcacccc gtaaacgacg aggcggtggg gacgacgaac
      301 cggagctgca gggccgtggc ctggagcccg gagagccacc tcctggggaa cagggggagc
      361 cccaggtcag ccgggccgcg ggcggcggcg acagggtaga gagcgcgggc agcccgcagg
      421 gagccgacga ggtgcacagc cagcacaatg aagacttttg gcagtataat acattccagt
      481 attggaggaa ccctctacca cctattgatc tggcagctct tgaagatgtg agtgcaaaca
      541 gcctgacaga aacccttgag gacaagaatg aaggagttga gattgacatg gagtcctgac
      601 agaaggatcc aaaggaatgg gattcattga attggaggag acctatggaa aagttctttt
      661 ccatacttga catgatactc ttttcaaacc tgaaatatga ggaagagttc tgggataaat
      721 aactaattac tactgaatct cctcatggag agttggaaag gatatataca gctgcagaca
      781 aaatactttg tgtatacatt tttaatgaag aaagttttgt tcgtgctctt gactttgaag
      841 atgcttatct tagaaaagga ggttttggac agtctaagag gaagcactcg ggtcttccac
      901 acttgttctg tcaaatgttc ctttgtacca gaaagcttat ttgtggtaca cggaatgaat
      961 tcatttatac agcggatgct aataagtact ttctagtaca tcttattggc tccccttggt
     1021 tgaacaaata ggagacatgc aaataagaac aaataggagt atctatgcaa aagtaaaatg
     1081 tgggattgtt cctggaaatt agctttgttc taagagtgta aatttaaact agtgagaact
     1141 tccatttggg tagcttgttt taactttcac tatttactgt ttattaaaac agtataggca
     1201 atgagtacag ccaaacaatg gatagagaac agtagaaagc agatgcctgc ccctcccccc
     1261 tttttctgag atgaaagaaa tgatctggtc agtttactga tttttgttgt gaggacattt
     1321 tttatattgt tgattacttc agatctgtag ttctcaacac ttagagcact ttaaccatct
     1381 ctgcttgagc cctggtccta gagagatctc attcaactat ttgcaggtga ctttacacat
     1441 aggttgtttt gttttatttt atttttgcac caattctgta tcctgtattg tgtaggtggg
     1501 gccagaacca ctagaccagc agcttttcct atttaaagga gatcactagt gcaagctgca
     1561 gcaacgcctc ttcattagtt ttgtctatat cttatgttac ttgatttgtc gttactaagt
     1621 tattgtgtta caatttattt tttaataaag tacactgttt atgtttgagc tatgtaaaaa
     1681 aaaaaaaaaa aaaaaaaaaa aaaa
//
