LOCUS       XM_001073960            5667 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to human chromosome 2 open
            reading frame 78 (C1h2orf78), transcript variant X1, mRNA.
ACCESSION   XM_001073960
VERSION     XM_001073960.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_001073960.6.
            
            On Jan 21, 2021 this sequence version replaced XM_001073960.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5667
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5667
                     /gene="C1h2orf78"
                     /note="similar to human chromosome 2 open reading frame
                     78; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 5 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:690284"
                     /db_xref="RGD:1582830"
     CDS             2994..5594
                     /gene="C1h2orf78"
                     /codon_start=1
                     /product="uncharacterized protein C2orf78 homolog isoform
                     X1"
                     /protein_id="XP_001073960.1"
                     /db_xref="GeneID:690284"
                     /db_xref="RGD:1582830"
                     /translation="MSENFQSSPFFGTERARQLSLPVLSNSTQSAGRVCNISRVSTPD
                     MNSPWLLPSASSTSLQPLMGNAYLNPHAGTTMLTVLTEQGQISTSAPSYPGALKWDFP
                     GSRDGREEALQGVNVTIIDQDTTLSSLAITNQCDKILDPSAIVPFYPTLSASFVQVTP
                     PQMPNQGYSLAPSYQDGSSQVYYYEHNSLGPLIAGEFGQCLQAHGSMPYPGSQTSAIQ
                     PEMVMVLKEIQPRNVQIPLFTSAFSYSTSAQSNSLPVVQMETSLGLPPSGQTHCQLQS
                     PELYSTCAQVSQIRPSAVNGDRALTAPIHSPSEFLALPPAPSLEQTENKNVNEINDEF
                     LKTLDAYEGTKENQDTSIVTLAHPDLQQPLQCADTEGLRPKSASDIAHLEGISMGPKK
                     LGGLENEIRSSFDFKDISTLEADIQLPQLLNTLTDIDQDQACENWKVISGPSDQVRKN
                     KHKSSEPLEGAPQAKIQHQDLVEGEASVCVAGTSNKAIENMAKHLEGKAPKVAANKNK
                     RGRKQGQEKPSGPENNSKKTDELKQSRKRVKAEEKPTVPKTKRKRNPPELSQTSFKKP
                     RTHLGMHMLESVQVFHPLGKKSEKKPGISSLGSLRTFTSNKDPGPSPVTTAVLNMSCE
                     GQGPPKSPRKTQIAESSASKECPSQSQYELPPAGKVKLVPLPFPTLDKPQARPISRKP
                     LSLASHRPTTVHPVQPHSHSAQLTTHRPSQLAPVSTSSMASTKPASPISSSATGPSGT
                     NLIQSSAVPQVATSRPVPHRASSHTSFQRELVSAAKNKVPSPPKPQTQYLLQDFSRQP
                     IPWKKVDILGPVVSQPITKEQRPEREAMKRRAQQERENAVKNTATGKLQLFLQREKDM
                     EISQYYGYAM"
ORIGIN      
        1 tttgcccgga aaccgggaaa gggaataaca ctcgaaatgt aaataagaaa tactcaaatt
       61 aataaaaaac aacaacaaca acaagaaaaa ccctggtcat ttaacaaaaa atgttatcaa
      121 tgaaataact cctgataata ttctgctata ctcatagttc agtgccttaa cctgttatca
      181 tcagaagctt tctctgaaaa cagttgagaa cagatgtaga cattatggaa acagctagac
      241 aatatgggag agggagtcta aatagtatgt ttccatcaaa tgtctatcct tagagctcag
      301 tgaatcccac agaaaaggag gtgaaatgac tgtatgagcc tgatggcctg aaggacaaga
      361 aaacaaggtc ctctgaatca aatataccag gctcttatga gctcagagag aatgaagggg
      421 caagcacagg ccctacatat gtctggacca agtcctttgc atatatatca tctcaatgag
      481 cttgggattt ctatgggaat attagttgtg aggacaagta ggtctcttac tctgatgact
      541 gcacttgagc ctctttgcca cccataagtt ggccctgtta aacttgaaaa tgatagattt
      601 gctttatctc agtatatttt tatttggttc tatttgtttg ttgtcttggt gaagcatatt
      661 ctttcctaat aaaagataca aatgaaaggg aaactgagga gggtaactgt ggatgagcaa
      721 gaaagtagag gcaaaggaaa ctaaaatcag gatatattct aaaaaggaaa attaaacaaa
      781 tcaatgtata aaaatttaaa tcaataaaca gaaactatgt gatttaaaaa gtataaatga
      841 caccatctct ccatattgat ccctcttttc tctgtgtgtc tgtctctcag tattttttgt
      901 ctttctgttt ccttcttcct ctcccacctt ttccccctct atctctcaca tcaatctgct
      961 taatctcaga atcctggtga tggtctactt atcttggatg ctacagaagg acaatgtttt
     1021 tttcctgtac catctacaac caggagccta ctttgaagca tggccttgac aaaagtttca
     1081 aattatttga cagctgacag gagaggagtg aatctcattt ctggtgtagt atcaaacatg
     1141 acatacttcc tgcagagatt tgtccagaac taaacaactt tacactgcct acatggaagg
     1201 acatttctac tgaggtggac atgcaggtgc ataaaacagt actagctcag agtaaaagct
     1261 cctcaatgaa cattctagaa cctcatgtga ctgctggagg acagctaaaa tggctctaat
     1321 gtcattttta ataaaaacta atagacactg ctgtatgagt taatgctttg tgaggtagat
     1381 agaatacaaa atgtgaataa attcatgcta gacctatagc aaataccatt ctatgaactt
     1441 atcaggaaat gacaaaagtg ggagatacaa cccaggacaa aatgaagaag ggttcaagag
     1501 ttctctatat agcaacaaaa tgccagtgca tttctgtgtg tgaagataca ctgggatggt
     1561 gaaaaggttg gttctttatt cacaaataaa ccaaaatacc tacattattt attttcattt
     1621 aacccagcac cctgtaccaa ctaaggcctt cttttgtttt ctacttgacc caccatctct
     1681 gctttagcca gttctcagat ggtagagaat gctagaagcc caagattcta cagagtatgt
     1741 tgcaaggagg aagaagctac agtaatcaaa agccatgctc cttttgatta aagacaaaga
     1801 gagaacacat tcagactagg tagctcacaa ccataatcct acaaacaagg aaccatagac
     1861 caaaagagtg tccatgagtc taatgccgaa gggagatatg cagtgagttc caaaacaaca
     1921 tgagttacag agaaagacct atctctggaa aaatcaaaga gtagagaaaa tatctagact
     1981 aagcagagtg tgggcaggag aacagcaaca aatgctgaaa gagggaacac atgcagccag
     2041 cctcatcatc agtccttctg ttgtttacta gtaagtgtag aatccacttt acatacaact
     2101 gtcagatgaa atcaagacca ctgtttctgg aaatttactg tgctatcacc ctctagtgta
     2161 aggatgcagg atgaagctgg tccaaggatc aaagcctaca aagcagggat gaaacggaat
     2221 gaacaaaggt ctgagtccaa catgggccag aagagtcaaa taaagaaaaa atgactcctt
     2281 gacaagaaac cccaaaaata tactcttggg atttacagtc tcctacaaga tggcttcaat
     2341 gcactcaaac ctgctcttca acacagtcac aaaggagtcc tttaatctcc ctttgttcat
     2401 ggacatatgc agacagctca caactcaacc tagttacctc aatctagatg accctctcct
     2461 tcctgcctaa ggctcctgtc tctgtgtaca gtgtctgctg atgaactaca ttcttttgga
     2521 atgtgacaca tcctatgcac attattaaca gttcccgaat ttgacaagaa acactcatga
     2581 tctcctaagc taagaggcaa ggcaaaagga atagccatgt aaagattacc acctttcacc
     2641 agcaattacc tcagccttca gggctgctat ttctctccta atatcttctc cactcaaccc
     2701 tttcttgcag ctcagaatct gtccttccca ttggctacag cctgatttat gacatcattc
     2761 tccctcctag cctatcagca cctggtagaa tcctgaggtt tccatggtgc tgcctgtaaa
     2821 caaatttgga tcattacagg taacctgtga ccagtgacca gtagtatcca gtgagctctg
     2881 tctgatacta gacacactcg ttggtttggt cagcaaatca gacaaagact accatttatc
     2941 tggctcaatt gtagggtgga gtactcttac tccccctact gagcccccca accatgtccg
     3001 aaaatttcca aagttcacct ttctttggga cagaaagggc tcggcagctt tctctgcctg
     3061 tgctgagcaa ctctacacag tctgcaggaa gggtgtgcaa catctccaga gtctccaccc
     3121 cagatatgaa ttcaccatgg ctcctaccat cagcatccag cacttctctc cagccactca
     3181 tgggtaatgc ctaccttaac ccacatgctg gcacaaccat gctgacagtg ctgactgagc
     3241 agggtcagat ctccacctcg gcaccctcct atccaggtgc tctcaaatgg gatttccctg
     3301 gaagcagaga tgggagggaa gaggcactcc agggagtcaa tgtaaccatc attgaccagg
     3361 acactacact ctcctccctg gctatcacaa accagtgtga taaaatttta gatcccagtg
     3421 ccatagttcc tttctatcca acactgtctg ccagctttgt ccaggtcaca ccaccgcaga
     3481 tgccaaatca aggatacagc ctggcacctt cctaccagga tggtagtagc caggtctatt
     3541 actatgagca caacagcctg ggtcctctga tagctggaga atttgggcag tgcttgcagg
     3601 cccatggctc tatgccctac cctgggagtc agacctctgc gatccaacca gagatggtga
     3661 tggtgctaaa ggagattcag ccaaggaatg tccaaatacc actctttacc tctgccttct
     3721 cctattccac atctgctcaa tccaacagtc ttcccgtggt tcaaatggag acgtccctgg
     3781 gattgccacc ttcaggccag acacactgtc agctgcagag tccagaactc tacagcactt
     3841 gtgcccaggt ttctcagata aggccatcag ctgtcaacgg ggacagggca ttaactgctc
     3901 ctatccatag tccttcggaa ttcctggcct tgcctccagc tccaagcctg gaacaaacag
     3961 agaacaaaaa cgtgaatgag ataaacgatg agtttttaaa gactctggat gcctatgagg
     4021 gcacaaaaga aaaccaagac acatcaatcg tgactttggc acaccctgac ttgcagcagc
     4081 ctctgcagtg cgctgatact gagggtctaa gaccgaagtc tgcttctgac attgcccatt
     4141 tggaaggcat cagcatgggt ccgaaaaagc ttgggggact ggagaatgag attagatcca
     4201 gcttcgactt caaagacatc tctacacttg aggcagacat tcaacttccc caactcctca
     4261 acacccttac agacatagac caggatcagg cctgtgaaaa ctggaaagtc atcagtggcc
     4321 cctctgacca agtgaggaag aataaacata aatcttctga gcctcttgag ggagctcctc
     4381 aggctaaaat ccagcaccag gatctagtgg agggagaggc gagtgtgtgt gttgctggga
     4441 ccagcaacaa agctattgaa aacatggcaa agcatctgga gggcaaagct cccaaagtgg
     4501 ccgccaacaa gaacaaaaga ggtagaaaac aggggcaaga aaagccaagt ggaccagaga
     4561 acaactctaa gaaaacagac gagcttaagc agtccaggaa aagagtcaaa gcagaagaga
     4621 agcccaccgt ccccaagacc aagaggaaga ggaatccacc tgaactcagt caaaccagct
     4681 ttaagaagcc tcgaacccac cttggcatgc acatgctgga gtccgtgcag gtctttcacc
     4741 cactggggaa gaagagtgag aagaaacctg gcatctcctc cttagggagt ctccgaacct
     4801 tcaccagcaa caaagatcca ggcccaagcc cagttactac agcagtgcta aacatgtcat
     4861 gtgagggcca gggtcctccc aaaagccctc ggaagactca gatagcagag agcagtgctt
     4921 ccaaggagtg tccatctcag tcccagtatg agctgccccc agctggaaag gtcaagttag
     4981 tacctctgcc ttttccaacc ctggacaagc ctcaagccag acctatttct agaaagcctc
     5041 tttccctggc ttcacacagg cccaccacag ttcaccctgt gcagcctcat tcccactcag
     5101 ctcaacttac aacacacagg ccatcccaac tagctcctgt cagcacatct tcaatggcct
     5161 ctaccaagcc agcttctcca atttcctcta gtgccacagg acctagtgga accaacctca
     5221 tccagtccag tgctgtgcct caggtggcaa catcaaggcc tgtaccccac agagcatcat
     5281 ctcatacttc attccagaga gagctcgttt ctgctgccaa gaacaaggta ccatcacctc
     5341 ccaaacctca aacccaatat ctgctgcaag actttagccg ccaacccatt ccatggaaga
     5401 aagttgatat tctgggacca gtcgtctcac agcccatcac aaaagagcaa agaccagaga
     5461 gggaggccat gaagaggcgg gcccaacagg agcgcgagaa tgctgtcaag aacactgcta
     5521 ctgggaaact gcagctcttc cttcagaggg agaaggatat ggaaatttct caatattatg
     5581 gctatgcaat gtaagagctg gccagatctt tttttttttt ttttagcaaa atcctttttc
     5641 acattgattt gaagagatat attcact
//
