LOCUS       NM_001025001            2177 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus similar to human chromosome 16 open reading frame
            54 (C1h16orf54), mRNA.
ACCESSION   NM_001025001 XM_219344
VERSION     NM_001025001.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2177)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 2177)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC091216.1.
            
            On Jun 25, 2005 this sequence version replaced XM_219344.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC091216.1, CO559216.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06680412, SAMN06680421
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2177
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q37"
     gene            1..2177
                     /gene="C1h16orf54"
                     /note="similar to human chromosome 16 open reading frame
                     54"
                     /db_xref="GeneID:308990"
                     /db_xref="RGD:1564503"
     exon            1..48
                     /gene="C1h16orf54"
                     /inference="alignment:Splign:2.1.0"
     exon            49..2152
                     /gene="C1h16orf54"
                     /inference="alignment:Splign:2.1.0"
     CDS             405..1082
                     /gene="C1h16orf54"
                     /codon_start=1
                     /product="transmembrane protein C16orf54 homolog"
                     /protein_id="NP_001020172.1"
                     /db_xref="GeneID:308990"
                     /db_xref="RGD:1564503"
                     /translation="MPATPQQPSGHTEGLTEPTSEAAMWVVIPCGPCIPIMLGLASLT
                     AFFIITTAVLAERLFRRPQPDPSQRAPTLVWRPGGELWIEPTSSARERSEDWYGSSIP
                     LLMDRAPDPPTPGGTLEGRATAPPAIPTPHPSPSSLVPQTPPEVPAQSTFWRPQTQEE
                     SPYATGLVSWVGPEPMAEAGLEVGSPRAWRLRQGSLEPDWSLQPRVTLEQISAFWKRE
                     GRTSVGF"
ORIGIN      
        1 agaagggctc cgaagacagt gaaatccaag attgacccaa ggtgacagtc acccatgctc
       61 aataagccaa ttagaagagc cgaattgacc tcgggaagca ggaagatata gtcagtgtgg
      121 ccacccacac tctagagaga ggcaaagaga tccagcaccc cctcctcccg gtctgtctct
      181 gagattctga agtgaaatta cagtttaaat agaaggccaa ggatttgcag tcccagcgat
      241 tcgcagtcta accacctgtc tcctcctgtg agatggtcaa gttgttagaa gtgtgttgaa
      301 tctctttcca ggaaacggga tatcctctga ctggtgccct ttccttctcc cagtggagac
      361 attccctgat tcgactattc tgagcacacc actgtgtctc ccagatgcct gcaactcccc
      421 agcagccctc agggcacacg gaggggctca ctgagcctac atcggaggca gcaatgtggg
      481 ttgtaatccc ctgcggccct tgtattccca tcatgttggg cctggcctct ctcacagcct
      541 tcttcatcat aactactgct gtactggccg aacgcctgtt ccgccgcccg caaccagacc
      601 ccagccagcg tgcacccacc ctagtctggc gccctggagg agagctatgg attgagccca
      661 caagcagcgc ccgggagcgc tctgaggact ggtatggctc ctccatacct ctgctgatgg
      721 acagggctcc agatcctcca acccctgggg gcaccttgga gggcagagca actgctccac
      781 cagccattcc aacaccacac ccttcaccca gctctttagt tccccagacc ccaccagaag
      841 tcccagccca gagcaccttc tggaggcctc agacccaaga agagagtccc tatgccacag
      901 gcttggtgag ctgggttggg cctgagccga tggcagaggc tggcttggag gttgggagcc
      961 ccagggcttg gaggctgagg caagggagcc ttgagcctga ctggagtctc cagcctcggg
     1021 tcaccctgga gcagatctcg gcgttctgga agagggaagg caggaccagt gtgggcttct
     1081 gaatcttcag aacccataag actaattccc acctaagagg ggataggggg gtcagctcca
     1141 gcctccagcc tgatcctcgc actggatagg gccttttgtg tggaaatatc tgtcttctgc
     1201 acctgacctg tgggcaggtt aagagtgtgg acagcttgta ctccaaggat tgcactgaag
     1261 ttcggctttg gttaaaatgc ctaggttgtg actctgagaa ttgaagacaa ggctagttgg
     1321 ctaaaagcca gaaggcttca agatggtaca tcagggtaca cacttaccct aagacagcct
     1381 gtcagaatga agaggtcctg tccgcgatgc cagagctagt gactatgagt gtcagtcatg
     1441 tgggcagggg atggcaggaa tcttgctccc cagagccaca aaccctatct gttcccagcc
     1501 actctctccc acctctgtga ggccctccaa caaaacacag aagacaaatc ctggaggagt
     1561 ctttgtttcc atacaaatca tgactttggt tactaagtgg caacatggaa tttgctgagc
     1621 cgagctggag aggctgtctc ttgccggaaa ttgggacaga gactcaaaag ggatcagtag
     1681 gctcctctgc tcacccactt atggctgcac acgtgctaca gtgcagtttt attaatccgt
     1741 gttaagaaaa ggatggccga aagagaactg agtggtatga gaaggaaggt tgtcccaggg
     1801 aagggacact ccccagacat agcctttgcc gtccttccct ccagcttgct ggagtggttt
     1861 agagagccag gtttgctgtg aggcagactt acttatagtg atccattcca cagaaacgga
     1921 gtcccaaata tctgtgtgcc cgccggctga cttctccttc aggagagggg ttcacagcag
     1981 gaaacacact ggaactcctg gagctccccg tccctggaaa tctgagttcc caaacttcag
     2041 tcaagaacat gaagatttgt ccatatcagt ttaccctttg ttttatgatt tactttatat
     2101 tttttcctta aattgatttg ctgtttgctt aataaatttg ttttaaagtg aaaaaaaaaa
     2161 aaaaaaaaaa aaaaaaa
//
