LOCUS       NM_001024749            2051 bp    mRNA    linear   ROD 22-SEP-2024
DEFINITION  Rattus norvegicus similar to human chromosome 15 open reading frame
            40 (C1h15orf40), transcript variant 1, mRNA.
ACCESSION   NM_001024749 XM_214985
VERSION     NM_001024749.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2051)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Mar 9, 2021 this sequence version replaced NM_001024749.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC094529.1, SRR26360176.47815.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760393,
                                           SAMN12840113 [ECO:0006172]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-125               JAXUCZ010000001.1  145141123-145141247 c
            126-252             JAXUCZ010000001.1  145140061-145140187 c
            253-380             JAXUCZ010000001.1  145138142-145138269 c
            381-2051            JAXUCZ010000001.1  145135088-145136758 c
FEATURES             Location/Qualifiers
     source          1..2051
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q31"
     gene            1..2051
                     /gene="C1h15orf40"
                     /gene_synonym="RGD1305713"
                     /note="similar to human chromosome 15 open reading frame
                     40"
                     /db_xref="GeneID:293059"
                     /db_xref="RGD:1305713"
     exon            1..125
                     /gene="C1h15orf40"
                     /gene_synonym="RGD1305713"
                     /inference="alignment:Splign:2.1.0"
     CDS             96..476
                     /gene="C1h15orf40"
                     /gene_synonym="RGD1305713"
                     /note="isoform 1 is encoded by transcript variant 1;
                     UPF0235 protein C15orf40 homolog"
                     /codon_start=1
                     /product="UPF0235 protein C15orf40 homolog isoform 1"
                     /protein_id="NP_001019920.1"
                     /db_xref="GeneID:293059"
                     /db_xref="RGD:1305713"
                     /translation="MPKKAGATSKGKNQTKEPETPPPPTGPVATDSKGFVTIAIHAKP
                     GSKQNAVTDLNTEAVGVAIAAPPSEGEANAELCRYLSKVLDLRKSDVVLDKGGKSREK
                     VVKLLASTTPEEVLEKLRTEAEKK"
     exon            126..252
                     /gene="C1h15orf40"
                     /gene_synonym="RGD1305713"
                     /inference="alignment:Splign:2.1.0"
     exon            253..380
                     /gene="C1h15orf40"
                     /gene_synonym="RGD1305713"
                     /inference="alignment:Splign:2.1.0"
     exon            381..2051
                     /gene="C1h15orf40"
                     /gene_synonym="RGD1305713"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctgccgcct tccgtggcgc ctgcgaagtt gtgatgctga agctccttgt aggtcgctgt
       61 gcttggcctc tactagactc ctgtgtggtt ccacaatgcc taagaaagcc ggtgcaacaa
      121 gcaagggtaa aaaccaaacc aaggaaccag agacaccacc tccccctaca gggcctgtag
      181 caactgattc taaaggcttt gtcaccatag ccatccatgc caaacccggc tccaaacaga
      241 atgctgtgac agatctgaac accgaggcgg tcggcgtggc catcgcggca cctccgtctg
      301 agggagaggc caatgcggag ctctgtcggt acctttccaa ggtcttggac ctcaggaaga
      361 gtgacgtggt tctggacaag ggcggtaaat ctcgggaaaa ggtggtgaag ctcttggcct
      421 ctacaactcc agaggaggtc ttggagaagc tgagaacaga agctgaaaaa aaataaaggc
      481 gagaaatggc gtgtacttcc ttgtgggctc tcatgagagt agcggggcca cgcaggaaaa
      541 tgtacatcgg tgcctggcca tggagagagg aatacataga tgaagtcaga ctaaatgaaa
      601 ggagaaaata taaatctaca gactctcaaa tccctcactg tgggagctgg ggagacagct
      661 cagtggcgaa gagcgtttgc cgctcttcca gggattcggc tcagctccca gcactgacac
      721 tggagggctc acacaaactc cggttccagg atgtcgccat tcttttcctg gcccctgagg
      781 ccactgcaga cctgtagttc atacatgtgc attccaggca cacacactaa gtaaaccttt
      841 aaatccctga gtgcagacag cctggaatat atcactctaa cttcatggga ttacaacgga
      901 ccagctactg tccacgatgg agctcctgat ctgcaggcat tgggagatga gctgaagatc
      961 accgcacaga ggatgacggg aaaccaactc cccggactcc aagtgaagtg cttctagcct
     1021 cgtagctccc cacagtgttt ctggagtcct ggggtcttct gatcctgttt acaactggga
     1081 aaaccttttg tactgcttct attttaaggt ttttttaaat gcaaaagtgt ttacttttta
     1141 tcttcttttt tttttttttt tttttaattt ttatttattt gagtacacac tagctgtctt
     1201 cagatacacc agaagagggc agaccattac agatggttgt gagccaccat gtggttgctg
     1261 ggaattgaac tcaggtcctc tggaagagca gtcagtgctc ttaaccactg agccatgtct
     1321 ccagccctac tttttatctt ctaatgatca tatagaacat tttgtggaaa agtaaataat
     1381 catggagacg tgtaacttat tgtcagttac tttcagaacc ttgtaaactt tcaaatctag
     1441 aagttcttag gagtctccaa agatcttaaa agagtcaaga ggtgtctaga gcaatgacca
     1501 gcagttaaga gtgcttacgc tcttggagag gacatgagtt caattcccag caacccaaca
     1561 tggaatgact cacaactgcc tgtaactcca gtttcaagag atccaatgcc tctggtccga
     1621 gggcacccac acccatgtat gcatacacag acacatacct gcagagatag agacagacac
     1681 atacataatt gaaaataact taacaaataa aaaaaaaatg ataaagatgt cctggaagtt
     1741 cttctcattg tttgttaagc ccatcagaaa tcagttggga atgtttcctg atgtgcatga
     1801 agccttgggt tcagtcccca gccctgcgta aattgggtgt ggtgtggtat actctgagtc
     1861 ccagcactct ggagctgagg gcaggaggat gagaagttca aggttccttt acataataga
     1921 gtcccaggtc agctcgggac acgtgcacct atatatctag atctgtatag ataacgtgta
     1981 tatgttgctc agtaacacaa gtatgtgtat atatagctgg gaagataata aacatatatg
     2041 tttgacctaa a
//
