LOCUS       NM_001013898            1472 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 11 open reading frame
            58 (C1h11orf58), mRNA.
ACCESSION   NM_001013898 XM_215023
VERSION     NM_001013898.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1472)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            FM053223.1 and JAXUCZ010000001.1.
            
            On Sep 16, 2014 this sequence version replaced NM_001013898.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ225875.1, FQ227306.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-621               FM053223.1         1-621
            622-1472            JAXUCZ010000001.1  179779587-179780437
FEATURES             Location/Qualifiers
     source          1..1472
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q35"
     gene            1..1472
                     /gene="C1h11orf58"
                     /gene_synonym="RGD1311703"
                     /note="similar to human chromosome 11 open reading frame
                     58"
                     /db_xref="GeneID:293160"
                     /db_xref="RGD:1311703"
     exon            1..215
                     /gene="C1h11orf58"
                     /gene_synonym="RGD1311703"
                     /inference="alignment:Splign:2.1.0"
     CDS             153..698
                     /gene="C1h11orf58"
                     /gene_synonym="RGD1311703"
                     /codon_start=1
                     /product="small acidic protein"
                     /protein_id="NP_001013920.2"
                     /db_xref="GeneID:293160"
                     /db_xref="RGD:1311703"
                     /translation="MSAARESHPHGVKRSASPDDDLGSSNWEAADLGNEERKQKFLRL
                     MGAGKKEHTGRLVIGDHKSTSHFRTGEEDKKINEELESQYQQSMDSKLSGRYRRHCGL
                     GFSEVEDHDGEGDVAGDDDEDDSPDAESPDDSDSDSESEKEESAEELHAAAHPDDTED
                     PKSKKDAKSSYKMMFVKSSGS"
     exon            216..299
                     /gene="C1h11orf58"
                     /gene_synonym="RGD1311703"
                     /inference="alignment:Splign:2.1.0"
     exon            300..360
                     /gene="C1h11orf58"
                     /gene_synonym="RGD1311703"
                     /inference="alignment:Splign:2.1.0"
     exon            361..470
                     /gene="C1h11orf58"
                     /gene_synonym="RGD1311703"
                     /inference="alignment:Splign:2.1.0"
     exon            471..1472
                     /gene="C1h11orf58"
                     /gene_synonym="RGD1311703"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagcagtgac gactgtggcg gagaaggccc ggaggggctc tgcgttctgg agtggcgctg
       61 cttggtccgg cggctgggtg agggctgctg gtgtcgcgtt tgaggagaac tgcgagtctg
      121 tttggcctat acccatcggt atcccagcta cgatgagtgc tgcccgggag tctcacccgc
      181 acggggtgaa acgttcagcc tctcccgacg acgatcttgg atctagcaat tgggaggcag
      241 cagacttggg caatgaagaa agaaaacaga agttcttgag acttatgggt gcaggaaaga
      301 aagaacacac tggtcgtctt gttataggag atcacaaatc aacatctcac ttcagaacag
      361 gggaagaaga caagaaaatt aatgaagagc tggagtctca gtaccagcag agcatggaca
      421 gcaaactgtc aggacggtac cggcggcact gcgggctcgg cttcagtgag gtagaagatc
      481 atgatggaga aggtgatgtg gctggggatg acgatgagga cgactctcct gatgctgaga
      541 gtccagatga ctcggacagc gattctgagt ctgagaagga ggagtctgca gaagagctcc
      601 acgctgctgc gcatcctgac gacacagaag acccgaagag caaaaaagat gcgaagagca
      661 gttataagat gatgttcgtc aagtccagtg gctcataacc accaaacact tagtctttgt
      721 attaaaagta agccttattg ttataatgca cagtggagga ctgcttatag agcacagacc
      781 tttgtattat aatttttaaa aaggcccttt taaataacta caaagagtgt ttgctttcaa
      841 atgccgtggg tcacatttct cccggcatga ctataaccat ttttgtaaag agtcagagtt
      901 gtataaaatg agaaataaat actgcactca gcttcctttc atattagcat cctcagccct
      961 ctctccactg tctgcccctg taggtgcatc atgggggaca ctggctttgt ctgtggtagc
     1021 cctttcatct tcatcttttg gtttgttcct atttttctct tagatattca tttgatactg
     1081 tgacatgttc ccttgattat actttgttaa agcagacctg tccatcatgg atctggctgc
     1141 cagcagccat gctgcagacc attgatgaca gtccctgctt gttgagtctc tgctctcaga
     1201 ctagagcaag cacaggacac tggtgtgtgg aagtgccctg tcacatcatt tcaaggttgc
     1261 aatcccaaaa tgtctttata taatttgatt tcactgtatg gtaaagtttt gataaaattt
     1321 ggccagtttt tacagaagaa attatttctc tgctcattta gtcctgtata tttagaaata
     1381 tgtaaaactg gatttttttt tttaaggtac tatgtgacca aagttcattt tttcctccta
     1441 aggtctaaat aaagagaaag cagtttccca ta
//
