LOCUS       XM_006229947            1338 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus similar to human chromosome 11 open
            reading frame 42 (C1h11orf42), transcript variant X1, mRNA.
ACCESSION   XM_006229947
VERSION     XM_006229947.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006229947.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006229947.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1338
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1338
                     /gene="C1h11orf42"
                     /note="similar to human chromosome 11 open reading frame
                     42; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 ESTs, 1 Protein, and 87% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:308908"
                     /db_xref="RGD:1561034"
     CDS             264..1304
                     /gene="C1h11orf42"
                     /codon_start=1
                     /product="uncharacterized protein C11orf42 homolog isoform
                     X1"
                     /protein_id="XP_006230009.1"
                     /db_xref="GeneID:308908"
                     /db_xref="RGD:1561034"
                     /translation="MLVSTPHLLTLDEADATWALIKDKVIEERFGSNVVAVPFLSDAA
                     YYDLLGVLVKQSRPAHTRLALPGRQGRRALKSVGLLPNLLEQAGSEGVFAHCTREYSP
                     NGRAEIAYEEMRMLDGQPCRIRLHMGGLRKKVAFLLLPPGQVSLQQNLSWLRSTHSIY
                     VIYQVFTCTWLQLGLLPTSREPQMLRLQRSLPIAFSCLKFSLQPKGVLGPQKSLTKDP
                     LPQGANWVRPSLSIISTLAPTSVPADTPEVADVPPPVPAPPTPPPQEGPEGRPTRFSY
                     KGRNPFRRGPYMLSGSVLGVRQRRMKLSQEMQGARPLRSGIGILVPNKHQLLHPQTTL
                     GLCASSFQGPER"
ORIGIN      
        1 ggcataaagg aaacataaaa gggcaaaggg taatagaagt ggaaaaagga aataaaaatt
       61 tgtaaatatt atgatccact ggctgcaatg aggctaggag agttacggtg ctctctgtat
      121 ccaaggctct atcacctagc agggcctctg tgacctcatg ctagagtagg tcacagccca
      181 aggtaggtgg gccttacctc tctgggcagc tttggggttc ctgcagcagc cactactttg
      241 cccaaacact cccactcccc accatgttgg tcagtactcc ccatctgcta acactggatg
      301 aagcagatgc cacttgggcc ctcatcaagg ataaggtcat cgaggagcgt tttgggtcca
      361 atgtagtggc agtacctttc ctgtcggacg cagcctacta tgatctactg ggcgtgctag
      421 tcaaacagtc ccgtccagcc cacacccgcc tggctttgcc aggtcggcag ggccgaaggg
      481 cactgaaatc agtagggctg ctaccaaatc ttctagaaca ggcagggtct gagggtgtct
      541 ttgcccactg cactcgggaa tactcaccaa atggccgagc tgagatagct tatgaagaaa
      601 tgcgaatgtt ggatgggcag ccctgcagga ttcgcctaca tatgggaggc ttgcgcaaga
      661 aagttgcttt cctgctgcta ccaccagggc aggtgagcct acagcagaat ctttcctggc
      721 tccgaagcac ccacagcatc tatgtcatct accaggtctt cacctgcacc tggctgcagc
      781 tagggctttt gcctacatcc cgtgaacccc agatgctccg gttacagcgg tcactaccta
      841 ttgctttctc ctgcctcaag ttttcactgc agcccaaggg tgtgctggga ccacagaaat
      901 ctctgaccaa agacccattg ccccaaggag ccaactgggt tagacctagc cttagcatca
      961 tatcaactct ggcccccaca tcagtacctg ctgatacccc tgaagttgct gacgtacctc
     1021 cacctgtccc agccccacct acaccacctc cccaagaagg gccagaaggc agacccacca
     1081 gattctccta taaaggtcga aaccccttcc ggaggggccc ctatatgctt tcagggtctg
     1141 tcctcggagt tcgacagcga cgaatgaagc tgagtcaaga gatgcagggg gcaaggcccc
     1201 taagatctgg catagggata ctggttccca ataaacatca gctgctgcac ccccaaacca
     1261 ctctgggcct gtgtgcttct tccttccagg gtccagaaag atgaagagtc tccattttcc
     1321 cctaagcatc aagtccgc
//
