LOCUS       NM_001401982            1785 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 11 open reading frame
            16 (C1h11orf16), transcript variant 1, mRNA.
ACCESSION   NM_001401982 XM_017589568
VERSION     NM_001401982.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1785)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Mar 3, 2022 this sequence version replaced XM_017589568.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.405330.1,
                                           SRR22582424.798412.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840111,
                                           SAMN16676784 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-41                JAXUCZ010000001.1  173188846-173188886 c
            42-226              JAXUCZ010000001.1  173188168-173188352 c
            227-383             JAXUCZ010000001.1  173185985-173186141 c
            384-618             JAXUCZ010000001.1  173183267-173183501 c
            619-1242            JAXUCZ010000001.1  173181422-173182045 c
            1243-1785           JAXUCZ010000001.1  173177834-173178376 c
FEATURES             Location/Qualifiers
     source          1..1785
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q33"
     gene            1..1785
                     /gene="C1h11orf16"
                     /note="similar to human chromosome 11 open reading frame
                     16"
                     /db_xref="GeneID:499240"
                     /db_xref="RGD:1565905"
     exon            1..41
                     /gene="C1h11orf16"
                     /inference="alignment:Splign:2.1.0"
     exon            42..226
                     /gene="C1h11orf16"
                     /inference="alignment:Splign:2.1.0"
     CDS             60..1250
                     /gene="C1h11orf16"
                     /note="isoform 1 is encoded by transcript variant 1;
                     uncharacterized protein C11orf16 homolog"
                     /codon_start=1
                     /product="uncharacterized protein C11orf16 homolog isoform
                     1"
                     /protein_id="NP_001388911.1"
                     /db_xref="GeneID:499240"
                     /db_xref="RGD:1565905"
                     /translation="MQPSTRPGLPLPKCCSVATTVKAPDLHGAVPPWDMSVACPFATQ
                     AAWLPTHCTVTRCGSCCPCFHTADPQWPGLSWLGRVGDAAGSWVLARKEQDGFYYLAQ
                     IKAAPELEKRGALVVEFEAPLVTDVKLPAQQRRVVFPEDVIQFSPSVPHSLQLGDKVL
                     APWEPEQQQYGPGTVLLGLKKQKGQRASKEKEIPVHFWNGKTAKVPLDRVRWVPPTVW
                     KKAVERLQTPHTRDCHRSCLWAPHCSRLGPNTGCTAHRHPLDSSFLCPPCLSCACCQL
                     QCQSSCPLVGPSWWPFTGTSELTTRELPEPEKPTAQLLSLQGPKEVAVFSHNMSSSSS
                     SEEENSERHLEVGLPQRQMVSRAVNTDPILSETSLRQCSPHKPEWRYWRRNGPEPPPG
                     KLGS"
     exon            227..383
                     /gene="C1h11orf16"
                     /inference="alignment:Splign:2.1.0"
     exon            384..618
                     /gene="C1h11orf16"
                     /inference="alignment:Splign:2.1.0"
     exon            619..1242
                     /gene="C1h11orf16"
                     /inference="alignment:Splign:2.1.0"
     exon            1243..1785
                     /gene="C1h11orf16"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgggacaag gctgaggtct aggccagatt tgcactttta ggtgggcact ctgaaagcca
       61 tgcagccctc taccaggcct gggctgccgc tgcccaaatg ctgcagtgtg gccacaaccg
      121 tgaaagcccc tgacctgcat ggtgcggtgc caccctggga catgtccgtc gcctgtccct
      181 ttgccacaca agcagcctgg ctgcccacgc actgcacagt caccaggtgt ggttcctgtt
      241 gcccatgttt tcacactgct gacccgcagt ggccggggct cagctggctg ggaagagtcg
      301 gagatgctgc tggctcctgg gtcctggcca gaaaggagca ggatggcttt tattatctgg
      361 ctcagataaa ggctgcgccg gagctggaga agcggggggc cctggttgtg gaatttgagg
      421 caccccttgt cactgacgta aagctgccag cccagcagcg gagagtggtg tttccagagg
      481 atgtcattca gttttcacca tctgtgccac actcactgca gctgggagac aaggtgctgg
      541 caccctggga accggagcaa cagcagtatg gcccgggcac tgttctcttg ggcttgaaga
      601 aacaaaaagg acaaagagca tctaaagaaa aagaaatccc tgttcacttt tggaatggca
      661 agacagctaa ggtgcctctg gacagggtca ggtgggtgcc ccccacagtc tggaagaagg
      721 ccgtggaaag actacaaaca cctcacacca gggactgcca ccgttcttgt ctctgggcac
      781 ctcactgctc tcggctggga cccaatactg gatgcactgc acacaggcat cctctggact
      841 cttccttttt atgccctccc tgcctctcct gtgcctgctg ccagcttcag tgtcagagca
      901 gctgccctct ggtgggacct agctggtggc ctttcaccgg gacctcagag ctcacaacca
      961 gagaactccc agagccagag aagcccacag ctcagctctt gtccctacaa ggtcctaaag
     1021 aggtagcagt gttcagccac aatatgtcct cttcctcctc ttctgaggaa gaaaattcag
     1081 agaggcacct ggaggtggga ctgcctcaga gacagatggt aagcagggca gtcaacactg
     1141 accccatcct ttctgagaca tctctgcggc agtgcagccc ccacaagcct gagtggaggt
     1201 actggaggag aaacgggcct gagccgcccc ctggcaagct aggaagttaa aggatcatga
     1261 aaagagtaac cccaaagaat agttgacaaa ggaacagagg aggctgagtg gtggcgcaca
     1321 agagtaccta agagcaaccg ctctgcggag acctgcagga aagcggcatc tggaagaacg
     1381 tgctgtgcct gcacacaaat gggtggccat gccttagaac tcctggccaa tgccctgagg
     1441 aactgctcag gacacctatt cacagaggga caggcatgcc cactgctctg ggcaaaggca
     1501 tctcatttgt actgtcttct tataaagcct acagctatag atgggaaaca ctgtctatct
     1561 gctttttttt aaagatttac ttattatata caagtacact gtagctgtct tcagacacac
     1621 cagaagaggg cattggatcc cattacagat ggttgtgaat caccatgtgg ttgctgggat
     1681 ttgaactcag gacctctgga agagtagtca gtgctcttaa ccactgagcc atctcaccag
     1741 tctatctttc tttcttttta ataccaataa agtgaattat tttta
//
