LOCUS       NM_001106021            3129 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus C1D nuclear receptor corepressor (C1d), mRNA.
ACCESSION   NM_001106021 XM_001058059 XM_214099
VERSION     NM_001106021.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3129)
  AUTHORS   Henras AK, Plisson-Chastang C, O'Donohue MF, Chakraborty A and
            Gleizes PE.
  TITLE     An overview of pre-ribosomal RNA processing in eukaryotes
  JOURNAL   Wiley Interdiscip Rev RNA 6 (2), 225-242 (2015)
   PUBMED   25346433
  REMARK    Review article
REFERENCE   2  (bases 1 to 3129)
  AUTHORS   Schilders G, van Dijk E and Pruijn GJ.
  TITLE     C1D and hMtr4p associate with the human exosome subunit PM/Scl-100
            and are involved in pre-rRNA processing
  JOURNAL   Nucleic Acids Res 35 (8), 2564-2572 (2007)
   PUBMED   17412707
REFERENCE   3  (bases 1 to 3129)
  AUTHORS   Nehls P, Keck T, Greferath R, Spiess E, Glaser T, Rothbarth K,
            Stammer H and Werner D.
  TITLE     cDNA cloning, recombinant expression and characterization of
            polypetides with exceptional DNA affinity
  JOURNAL   Nucleic Acids Res 26 (5), 1160-1166 (1998)
   PUBMED   9469821
REFERENCE   4  (bases 1 to 3129)
  AUTHORS   Zamir I, Dawson J, Lavinsky RM, Glass CK, Rosenfeld MG and Lazar
            MA.
  TITLE     Cloning and characterization of a corepressor and potential
            component of the nuclear hormone receptor repression complex
  JOURNAL   Proc Natl Acad Sci U S A 94 (26), 14400-14405 (1997)
   PUBMED   9405624
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473996.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001058059.1, XM_214099.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC168684.1, FQ229896.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3129
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14q22"
     gene            1..3129
                     /gene="C1d"
                     /gene_synonym="RGD1560600"
                     /note="C1D nuclear receptor corepressor"
                     /db_xref="GeneID:289810"
                     /db_xref="RGD:1560600"
     exon            1..98
                     /gene="C1d"
                     /gene_synonym="RGD1560600"
                     /inference="alignment:Splign:2.1.0"
     exon            99..245
                     /gene="C1d"
                     /gene_synonym="RGD1560600"
                     /inference="alignment:Splign:2.1.0"
     CDS             108..533
                     /gene="C1d"
                     /gene_synonym="RGD1560600"
                     /note="nuclear DNA binding protein, pseudogene 1;
                     rCG23324; C1D nuclear receptor co-repressor"
                     /codon_start=1
                     /product="nuclear nucleic acid-binding protein C1D"
                     /protein_id="NP_001099491.1"
                     /db_xref="GeneID:289810"
                     /db_xref="RGD:1560600"
                     /translation="MAGEEMNEDYPVEIHDSLTALESSLGAVDDMLKTMMSVSRNELL
                     QKLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITD
                     KKKAAKLDRGAASRFVKNALWEPKPKNTPKVANKGKSKH"
     exon            246..312
                     /gene="C1d"
                     /gene_synonym="RGD1560600"
                     /inference="alignment:Splign:2.1.0"
     exon            313..368
                     /gene="C1d"
                     /gene_synonym="RGD1560600"
                     /inference="alignment:Splign:2.1.0"
     exon            369..3129
                     /gene="C1d"
                     /gene_synonym="RGD1560600"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agaccgggaa cgacgcatgc gcgggaggaa aaaaaaccgt gtcatggcgt catcattgcg
       61 cgacctcttt tccggagaca ggcgtccacg gtattgagtt ggtcacaatg gcaggtgaag
      121 aaatgaatga agactatccc gtagaaattc acgattcttt aacagctctg gagagctccc
      181 tgggggcggt ggatgacatg ctgaagacca tgatgtctgt ttctagaaat gagttgttgc
      241 agaagttgga cccactggaa caagcaaagg tggatttagt ttctgcatat acattaaatt
      301 caatgttttg ggtttacttg gcaactcaag gagttaatcc caaggagcat ccagtgaagc
      361 aggagttgga aagaatccga gtctacatga acagagttaa agaaataaca gacaagaaga
      421 aggctgccaa gctggacaga ggggccgcgt cgagatttgt caaaaatgca ctctgggaac
      481 ccaaaccaaa aaacacacca aaagtggcta ataaagggaa aagtaaacac taataatctt
      541 ttggttttga tgtacgtgtt ttcaaaaagt acatcatttt tatcagttta cagtgtactt
      601 atgtgaccat gtggtgttta aatggattcc tttttgaatt catgtataaa tttacacatt
      661 aaattttgtg atactgaatc tttttttttt gctgagaaag attaagttgt cgttattgat
      721 tttcctataa agcatcatga tgttttaata ttgaaagata ttctataagc aattgtgaaa
      781 tccaaatgtt ctttgtaaac gtttgtagtg ttttaaatgt agtgttatga tgaagtgtgc
      841 tgtctgtaga ctggagttgt tagaggacat ctgttttcac aatgatgaga aatgtaatga
      901 cttaaatacc cactctggtt tctgttcagt tagttcaaca tgtttctgtg aatttttttt
      961 taggagtaat tgctgtcttg atgttcacag tacaaaattg aaaccttcag gctgtatttt
     1021 aattcttcat gttccattta aaataaaata ttctcattca ttaatgctga tggaaaatag
     1081 gatgtatgtc ctggttggag ttggcttgat tcccttttaa taaatactgt agctgtgtag
     1141 ctcacttgtc tcttgctgtc cattgcatga gtgaacatga cctccagatg aggctgtaag
     1201 cagccccacc cactcgctgc acaacattta tgagtcacgg tcctctgttc ttctcttggt
     1261 ctcactcttg tagaagcttt ctgactaaat atttcctgag ccacatggct gttttgaacc
     1321 atcttcttta ttaaatactg ccccttaggc acaggaggaa tcaaattata tttgcattct
     1381 gagttatttt tccagagtgt ctgttatgat gaattccact tattaaacct tttaagtgtc
     1441 tgagctcata tgatcttgct tctctaggcc cacactgtcg tgtgtaggaa tgccaagggt
     1501 agccaggttt tatcgttttt gagaattaga gttgttgaaa ttgtccatga ttaatttttc
     1561 acaactgact ttgaatatat gaatttcttg attaggtagc agatactgga aatggtctga
     1621 agttataatg gactttgtaa agcatgctaa attcataaag agtaagtcac tagtagacgc
     1681 agaaagcctc agctctgtcg tcagacactg cgaggtggaa ggatacttgc gagcatttgt
     1741 agtcattgca ttctgggccg ttttaattct ctgataatag caaaagtaac ttcagtagag
     1801 aagtaagtgc ttcacgaaga taaccgtaga gtgcattctt aatgttagtc attgcaagga
     1861 aacttgtatc tcgtatttct ctttttaaat ttcataaaga aaagaatttg taatgaaaat
     1921 tttcacagtt gcagaaaatc attaaccaag gcacttgttt gtgaaagtcc agctctgtat
     1981 cccactaaat tggataccct caactatttc tttcagcatg tatttgtaga aatacaatat
     2041 tttgagtcta ttccatttta ttacctagaa tttgaagtaa ttacttgaac ataccaagca
     2101 gctgaacggt ggtagtttat taggttgtct gtcacaggtg cgctcactga cgtccacgtt
     2161 gccaagcact gtgctccatt ctgggtttca gagatggtgt gtgtagccct tgtgctgttt
     2221 tcctgaagtg ttactagttt aggtagtatt tcagagtgcc cagaagttat aggaattatc
     2281 ctcgctggcc tcagccagaa cgatacaagg tggtgagctg agtattaagt gtggagtggt
     2341 tattgggaac actattccag gtgatgctgt tctgtaaggg gaggtgttag ctgtatgttt
     2401 tattaatctt cttgggaatc aacactttgg aggaattgca gatgtgtagt cattgatcta
     2461 aatgaagtct tttaatattt taaataaaaa tttcttgttc acagatacaa agtgggaggt
     2521 agactatgtt atatgaaaat ttttaagatt aaatcacggt ttatatttct gggattaggc
     2581 cgtatcaagt aaatgggttt ttaagaaact gaagtataaa atctacttac gttactaaag
     2641 tggcctactc cagcttttaa aattgtttag aggcatgaat acttcaaaaa aaaaaaaaaa
     2701 ggacactact gaacgtagac ccttttttct taagtggtta ttgaaaaaaa tactttggaa
     2761 ctgatcactt gcaattctat tacattaaag tttaatacaa caaattccta gagcttgtga
     2821 ttttttcaaa gtattactaa ttgagaaaga tttgggtgtg attcctaaca tttgttaaag
     2881 aacaggaagc aaaagaagcc ctggccctca cagcagagtg actgagcttg tccagatgct
     2941 tcagtggttc tcctaatggt cttgacagag tccagatgct tcagtggctc ttcctcgtga
     3001 tctcagtggc ttcccggctt gtgtggatac gcagtggata tactttactg ctgtgaacat
     3061 gcatgcctct ttcctcccat tctaatttaa gacttgagtg ttggaattac aaaccataag
     3121 tcgtttagt
//
