LOCUS       NM_001034919            4024 bp    mRNA    linear   ROD 16-FEB-2025
DEFINITION  Rattus norvegicus 40S small subunit processome assembly factor 1
            (Fsaf1), mRNA.
ACCESSION   NM_001034919 XM_214719
VERSION     NM_001034919.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4024)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 4024)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 4024)
  AUTHORS   Ohta,S., Bukowski-Wills,J.C., Sanchez-Pulido,L., Alves Fde,L.,
            Wood,L., Chen,Z.A., Platani,M., Fischer,L., Hudson,D.F.,
            Ponting,C.P., Fukagawa,T., Earnshaw,W.C. and Rappsilber,J.
  TITLE     The protein composition of mitotic chromosomes determined using
            multiclassifier combinatorial proteomics
  JOURNAL   Cell 142 (5), 810-821 (2010)
   PUBMED   20813266
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000019.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001034919.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC105747.1, SRR26643296.39193.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMN12840110 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-98                JAXUCZ010000019.1  69719543-69719640   c
            99-427              JAXUCZ010000019.1  69717769-69718097   c
            428-484             JAXUCZ010000019.1  69710673-69710729   c
            485-580             JAXUCZ010000019.1  69710011-69710106   c
            581-667             JAXUCZ010000019.1  69709811-69709897   c
            668-726             JAXUCZ010000019.1  69709040-69709098   c
            727-4024            JAXUCZ010000019.1  69705313-69708610   c
FEATURES             Location/Qualifiers
     source          1..4024
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..4024
                     /gene="Fsaf1"
                     /gene_synonym="C19h1orf131; RGD1562218"
                     /note="40S small subunit processome assembly factor 1"
                     /db_xref="GeneID:292100"
                     /db_xref="RGD:1562218"
     exon            1..98
                     /gene="Fsaf1"
                     /gene_synonym="C19h1orf131; RGD1562218"
                     /inference="alignment:Splign:2.1.0"
     CDS             11..859
                     /gene="Fsaf1"
                     /gene_synonym="C19h1orf131; RGD1562218"
                     /note="uncharacterized protein C1orf131 homolog"
                     /codon_start=1
                     /product="40S small subunit processome assembly factor 1"
                     /protein_id="NP_001030091.1"
                     /db_xref="GeneID:292100"
                     /db_xref="RGD:1562218"
                     /translation="MAAERELDSSELPGSEALLDAVLRTLYDLGETEGETEQKRTRKK
                     KEKKRDSETVADRAAEPLPLPASPGRDQRKSASSFFKKLREELQSAPAAPSEVPAATT
                     AVSLFPLENDSKLVEVVEFHSRSEKRKPKSEEDKPAKNKTKVLEKDVVIQEFNLEKAR
                     LEVHRFGITGYGKGKERVLERERAIMLGAKPPKNTYVNYKVLQEQIKEKRTSMEEEKR
                     AAQETDIFKRKKRKGRSQEDRRSKKLAPSILSSGRAAQVGKFRNGTLILSPADIKKIN
                     SSRVSK"
     exon            99..427
                     /gene="Fsaf1"
                     /gene_synonym="C19h1orf131; RGD1562218"
                     /inference="alignment:Splign:2.1.0"
     exon            428..484
                     /gene="Fsaf1"
                     /gene_synonym="C19h1orf131; RGD1562218"
                     /inference="alignment:Splign:2.1.0"
     exon            485..580
                     /gene="Fsaf1"
                     /gene_synonym="C19h1orf131; RGD1562218"
                     /inference="alignment:Splign:2.1.0"
     exon            581..667
                     /gene="Fsaf1"
                     /gene_synonym="C19h1orf131; RGD1562218"
                     /inference="alignment:Splign:2.1.0"
     exon            668..726
                     /gene="Fsaf1"
                     /gene_synonym="C19h1orf131; RGD1562218"
                     /inference="alignment:Splign:2.1.0"
     exon            727..4024
                     /gene="Fsaf1"
                     /gene_synonym="C19h1orf131; RGD1562218"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctgattcca atggcggcag agcgagagtt ggattcctct gagcttcctg gttcggaggc
       61 gctcctggac gccgtgctgc ggaccctcta cgacctggga gagacagaag gtgaaacaga
      121 gcagaaaagg accagaaaga agaaggaaaa gaagagagac tcggagacgg tggcagacag
      181 ggcagcagaa ccgcttcccc tgcctgcgtc tcctgggcga gaccagagga agagcgcttc
      241 cagctttttc aagaagctca gggaagaact gcagtctgct cccgctgccc cttcagaagt
      301 ccccgctgct acgactgcag tctccctctt tcccctagag aacgacagca agctagtgga
      361 agtggtagag ttccacagca gaagtgaaaa aagaaaacca aagtcagagg aagataaacc
      421 ggcaaagaat aaaacaaagg tccttgaaaa agatgtggtt attcaggaat ttaacctaga
      481 aaaggctcgt ctggaagtac accgctttgg gatcacaggc tatggcaaag gaaaagaaag
      541 agtcctggag cgggagcggg ccatcatgct gggggctaag cctcccaaaa acacttacgt
      601 gaattacaag gttttgcagg agcaaatcaa agaaaagagg acctcaatgg aagaagaaaa
      661 gagagcggcc caggagacag acattttcaa gagaaagaag aggaaaggga gaagtcagga
      721 ggacaggaga tccaagaagt tggctcccag cattttgtca agtggacggg ctgcacaagt
      781 tggaaaattt agaaatggga cattgattct aagccccgcc gatatcaaga aaatcaattc
      841 ttccagggta tccaaatgaa gtccctgtca gctccagaga ggagcaggaa cagtggcagt
      901 gcgaaggcac aggacctgct gaccctgtgg ctgctcactc ttgttccaca gggtctttct
      961 cgtttgagca gtgagtctgt gggcaggcag cgaccctgcg gagtgcgggg ctgtgcccgg
     1021 gctcccctcc tgttgcaggt tgctgctgtt ggcacactgg tcactctcca cttttaattt
     1081 cactgtctct gtgaatgggg ttgaagtgcc ttttggactc atgaagacac tgactgcact
     1141 tgttatccat tggctctgtg ggagtcagcc tgacacgcgt gtgagtccac attgtaagaa
     1201 tttccaaaac tacacctctg taataggagt aactggctgt taggtaacac acaggtgatt
     1261 ctgacagggt ccccaaacct acttgcagct gtaatctccc tcacaaggcc attttacagt
     1321 gatgtcaccc ctgcctggat gtcagcatct cctcagagac tgagattcat taaagggaac
     1381 tctctggtga caggaacaat tttgatattt cccatccgag gagtgtcttg tccagcaagc
     1441 tgtgcacaca ggtttaaaaa cctgcaggtt gtggccggcc ataggacgtt gtcataatgc
     1501 gctgagagca ttgccaaaac aacccacaag atgaaatcta atttgttgga taatttaaat
     1561 gatgttttta agcttattta tttgtaagca agggcatatt gccacagtgc ttgtgtggaa
     1621 gtcacggggt ctggttctcc cagcatgcgg gtcccaggaa tcaaatttgg gtgtcaggct
     1681 tggcagcaaa caccttcacc tgctcacccc atcagcagcc ccatttagaa gatcgtaaca
     1741 ggacagcact agggagagac ctcagagcat ggaggagcta tggaaggtca ctgcatcagc
     1801 tgacaccatc ttctcaagga gagcctgggg gctgcggagt accaccgcca tgagccagca
     1861 gggcttagac agctgaggac tgccagcttg gaccagaggc ccagaataag taactagctt
     1921 tggtttctgc tttgtaatgt attgtgtaaa tatttctgct caaaccttaa ggaaggcaga
     1981 gaagtctact gaccaccaag tattgtagaa acacctcaga ggacaaaatg atccacaaac
     2041 agctctgttc tgagtgcaga ggaccaagcc taagtccgtg ctctggatga aggtttcctc
     2101 cagcaaaatt aactacagca gtgcttctca gatatttaca gttttcagct tattacaatg
     2161 gaaaacttac agtgatgaaa cagttttgtg gttgtgggga cgcgtcatca caacacgagg
     2221 aactgagtta aagggtcgca gcattaggaa gggcgagaac ggcctgctct atggaaagcc
     2281 atcctaaggg aaacagccat gcctgagttc ttgctctggc cacagcacag gacctggctt
     2341 cagtcacctc agggtttggc ccacacagct gtgcaggaca catgaatagg cagggcttgc
     2401 tgagatggaa gtggcctaca caggaaagga ccacactgtg aatcctgact ggccagatgc
     2461 tctcttagcc aatactgact tggatctcgg tggcaaagga gcactgtcct gatcccaaat
     2521 cagattgaca ggaagctgac attgccctaa ctgcacccat cacactccca gggccagagg
     2581 cagcacctgc cccagtgctt ggtggtagtc atgtgtctgc ctccttaact gctgtgactt
     2641 ctccctcccc ctgcatagtc cacctacctc ctccactcag gccttactgg aatccacacc
     2701 actcttgtac ccaccttact accccatcat ccacagcaag cttctgtgcc caccacggcc
     2761 ttgactgtat cttccgccat accgactcag ggccacctgc acatgttcat gtatgtgcac
     2821 gtgcatacat gtgttcaggt tcacatgcac atgtgtggag gagactagag ggtagcctca
     2881 gctgccgtcc cttaggtact gtctgcctgg ctgtttggtt ttaggtttgt gtaggtgtct
     2941 ctacctgcca tgtatgtctg tgtatcactt gcatgcttgg tgttcaggga ggccggagga
     3001 ggtgacggac cccatggaac tggaaccaca gatggttgta agccgccgtg tggtgctggg
     3061 aatggaactc ggaactcgga gccactactg ctctttgctg cgctttttct ccagttccct
     3121 accttgcatt tcaagactgt ctctcagtca cctggagcta aggaagtagg acaggctggc
     3181 aagccagtga gctcctggga cctgcctgtc tccagcacgg gaactcgagc tctggccgtt
     3241 gcttagatca ctgtattaag atgcccttca gagggtgaga aagcccagag cattttacat
     3301 gcttaggatt ttgactgtta ccatgcttga gttagaactc agaaaagcag gcaggctaaa
     3361 ctgaagatct ccaagcagtt tgcccgtcac atttttaaat gtgagtttta aggactagaa
     3421 ctgtgatttt tatgctcaca cagcatgcac attgactgag ctattacccc agccctccct
     3481 agtcacctct tactagtcag aaagtggata tatataagaa agacacaggc agtcctgaaa
     3541 gacactgaat ttgttagggg atcctcagct ttcctccacg agaagttctc agcccttaga
     3601 gctaatcttc aattagcatg cagcagtagc ctgtagctat tgcttaacta ggcccagctt
     3661 caatcagaaa tattcaaggt ttgtgtatgg tagggcgttg tgattgtctt agggtggtct
     3721 tttgatcccc gccccaaaga gattctcccg gccctaaaca agtttttaca gaatctaaag
     3781 ttcacaagtt tctagttaag acagtttggc gtttagcaaa cagaacctgc tatctacatg
     3841 ggcgtcagtg gtggccagtt ctcaagggag gagaggatct gtgacccttt ccagaaagga
     3901 ggaggggcaa gcaggttcag agcagaagcc agtggttcca gcctgctgcg ctgtctcagc
     3961 tcagtttgcc attctggttt ttttaatctg tttatttcat aataaatcat ttcattaaaa
     4021 aaca
//
