LOCUS       NM_001145021            1609 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus similar to human chromosome 6 open reading frame
            52 (C17h6orf52), mRNA.
ACCESSION   NM_001145021 XM_001062071 XM_574003
VERSION     NM_001145021.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1609)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1609)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC098763.1.
            
            On or before Feb 6, 2009 this sequence version replaced
            XM_574003.2, XM_001062071.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC098763.1, CO798743.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5756307, SAMEA5760383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1609              BC098763.1         1-1609
FEATURES             Location/Qualifiers
     source          1..1609
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17p12"
     gene            1..1609
                     /gene="C17h6orf52"
                     /gene_synonym="RGD1562963"
                     /note="similar to human chromosome 6 open reading frame
                     52"
                     /db_xref="GeneID:498729"
                     /db_xref="RGD:1562963"
     exon            1..275
                     /gene="C17h6orf52"
                     /gene_synonym="RGD1562963"
                     /inference="alignment:Splign:2.1.0"
     CDS             3..476
                     /gene="C17h6orf52"
                     /gene_synonym="RGD1562963"
                     /codon_start=1
                     /product="putative uncharacterized protein C6orf52
                     homolog"
                     /protein_id="NP_001138493.1"
                     /db_xref="GeneID:498729"
                     /db_xref="RGD:1562963"
                     /translation="MVETQSPGKECAVLPLWVLTVTSCPLPSAIREQLRVHHSLRCHR
                     DNHYELLHSFYWLSCYSRGSTLSGNGLGPLCVTENPELLAGPWAIPEETTDPAENQEE
                     DFLRDPNLHLNIEESDKEFMAVREELYDSLMNRRWHCLDTVLSNVPDELPQCEVF"
     exon            276..321
                     /gene="C17h6orf52"
                     /gene_synonym="RGD1562963"
                     /inference="alignment:Splign:2.1.0"
     exon            322..467
                     /gene="C17h6orf52"
                     /gene_synonym="RGD1562963"
                     /inference="alignment:Splign:2.1.0"
     exon            468..1583
                     /gene="C17h6orf52"
                     /gene_synonym="RGD1562963"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaatggtgga aacacaatca cctggaaaag agtgtgcggt gctgcccctg tgggtgctga
       61 ctgtcacttc ttgtcctcta ccatctgcca ttagggagca gctgagggtc caccacagcc
      121 tgaggtgcca ccgtgacaac cattacgaac tgctacacag cttttactgg ctctcctgct
      181 acagccgcgg ctccacgttg tctggaaatg ggctcggtcc tctgtgtgtg actgagaacc
      241 ctgaactgct agctggacct tgggctattc cagaggaaac cacagaccca gctgaaaacc
      301 aagaggaaga ctttctcaga gacccaaacc ttcatctgaa tattgaagaa tcagacaagg
      361 agttcatggc cgtaagggaa gagctctacg actccctcat gaaccgtcgc tggcactgtc
      421 tggacactgt tctgtctaat gttccagatg agctccccca gtgtgaagtt ttctgatgaa
      481 aggctctgac gaggcaccat ttgtaaggat ctcccaaatg gatcagacca tggagtaaga
      541 ccctttacct gttgcacctt gcactgaaga tgtgttctgc agaggggtgg accattgact
      601 gtgctgacac gacattaaat ttgcatgtag aaataaggct acagtagaga ttcctctagc
      661 aatgtggcat ggccacagcc tctcataatg cacttcaata ggctttgaaa cagacaattc
      721 caaaactgta tgcagaaaag acttcaggtc ttccttgtcg gttgaaggga aagtagccta
      781 gagacgtgta tgtagtcatt tgagtttcat aggttggaaa gtgtgaaaga aagcgatcat
      841 tgatgtgtac tatgtaaaag ctaactcttt ttccccttga ttagaaattt caatctgttc
      901 ctatcacttc acattgaata tgacatttta atatagaaat acaataggat ataagctgac
      961 tgagggtaca cttcagtggt agactgggta cttagccttc tgtccaggcc cagtaccaag
     1021 caaataatat ttaaaaagaa tgtatggagt tggcaaggtt ccccagcagg taaatgaact
     1081 tgccacccaa cctgacaacc tgagttcatc cttaggcccc ttagatcctt gggtagaggg
     1141 agagaatcaa ctccccaaag ttgtacactc cccagaacca aggcaggagg aaagaaaggc
     1201 tcaatttcct aacgatataa gtccttcaca cttcagaaat aacactttgt gtaaaccttg
     1261 cctcattcga cccaaggttt aggttgcagt ttgaatgtta aatgtcccgg ccagctcatt
     1321 tgcttgaaca tttggtccca gtccagttgg tggcactgtt tcagaacgtt ctagagcctt
     1381 taggaagtca accttcgtca ggagaatgga tcactgaggg ttgacttgag gtcggtagat
     1441 aggaattgtt tcccgcccta tctacgttct gcttcctgac tgaagagcca gggtgaccag
     1501 ctgcctcctg atcctgctac cttccctacc acgacagact gtctcgtcaa acaataagcc
     1561 agaataaacc cttgctcctt taaaaaaaaa aaaaaaaaaa aaaaaaaaa
//
