LOCUS       NM_001017495            1514 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus similar to human chromosome 4 open reading frame
            36 (C14h4orf36), mRNA.
ACCESSION   NM_001017495 XM_573553
VERSION     NM_001017495.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1514)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 1514)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC079214.1.
            
            On Apr 29, 2005 this sequence version replaced XM_573553.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079214.1, CK598909.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1514
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14p22"
     gene            1..1514
                     /gene="C14h4orf36"
                     /gene_synonym="Aff1-as1"
                     /note="similar to human chromosome 4 open reading frame
                     36"
                     /db_xref="GeneID:498330"
                     /db_xref="RGD:1564576"
     exon            1..254
                     /gene="C14h4orf36"
                     /gene_synonym="Aff1-as1"
                     /inference="alignment:Splign:2.1.0"
     exon            255..389
                     /gene="C14h4orf36"
                     /gene_synonym="Aff1-as1"
                     /inference="alignment:Splign:2.1.0"
     CDS             325..678
                     /gene="C14h4orf36"
                     /gene_synonym="Aff1-as1"
                     /note="AFF1 antisense RNA 1"
                     /codon_start=1
                     /product="uncharacterized protein C4orf36 homolog"
                     /protein_id="NP_001017495.1"
                     /db_xref="GeneID:498330"
                     /db_xref="RGD:1564576"
                     /translation="MAYGLPRRNTVQNILKGSCYKIQEPWDLAELTKTWYSNLTNINL
                     PFLGEIAFGSPMNLLAGQTKQDCPLPSMQTMALEKEYEAKRLAKLKSKENACKEMQVS
                     LREKSVGLRRPLQPK"
     exon            390..544
                     /gene="C14h4orf36"
                     /gene_synonym="Aff1-as1"
                     /inference="alignment:Splign:2.1.0"
     exon            545..1488
                     /gene="C14h4orf36"
                     /gene_synonym="Aff1-as1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaaggtcct ggtgttagca aggggcaact ctagcaaaac cctccggcac agcacagtgc
       61 caccgtttgc ttgggaccct aagagatgga gtccatctgt tcttcacagg aacacggagc
      121 tgtcgtcgga gcctcgagtg tgggcgtggg ccagcgactg tcacccacta gagcaaagtg
      181 actcccatgg agcgggctgg gtttgcgccc tgcgcgtgca taaagccctt tattgaggcg
      241 acaggtgacg cagggcatag tgaatagagc ggcgcagatg ttacatcggg cttctatgta
      301 aggaaacgat tgtgatcatt tgtcatggcg tatggcttgc cgagaaggaa cacagtgcaa
      361 aacattttga agggcagctg ttataaaata caggaaccat gggaccttgc ggagctcaca
      421 aagacctggt attcaaactt gacgaacatc aacttgccgt tcttgggaga aatcgcattt
      481 ggtagcccta tgaatctctt ggcaggccaa accaaacaag actgcccgct cccttcaatg
      541 caaaccatgg cacttgaaaa ggagtacgaa gcaaagcgcc tagcgaagct gaagtctaag
      601 gagaacgcgt gtaaggagat gcaggtttca ctgagggaaa agagtgtcgg cctgagaaga
      661 ccacttcagc ccaagtgacc cgaccacgta gcgtcaaacc tgaacctgtt tccggcatcc
      721 acgggcggcg aagctttcgg attcctccac agtgtcaagt agacacagca ctgtgtctat
      781 gggcgatggg gccaatgttg ctagacctgg ctcggcgaac gctgacagag cccccgggtt
      841 cctgccacac tcctgttctt tgtgccccac acagcagccc tctctgtaag tagatgagaa
      901 cgcatctgga gttgagtcgt tttgtgttcg ctcgtttcaa tgtctgtaag atcgcgtgcg
      961 gaagaggaca gttcttgtga gagtcagcgc tctgaagaga cgtttgcgat cccaaggaga
     1021 cttctcaaaa cgaagtcaga aagaagtcct tttaaaatga gaaaccgcat tttttctttt
     1081 tttctttttt ttctggttaa gaaaaacaga aaaacgatta agatttcctt tctgtcaact
     1141 cttcagttac caatttttgg taaagtttcg tttaatcgtt ctcacgtgcc acttcatgtt
     1201 taaatttttt atcacgtggt actttaaagt aagacttact tggcttttgt tcttctggaa
     1261 aaaaatgttg agccgctttc tttctggcta atattctttc tgcaacggac ctggagcagg
     1321 tgcggcacgt gtgtgtgaaa gggacacaga gggacaaaga cggcctcact gtgaggaaaa
     1381 tttatatttg cagagaggct ggggaatgag caaataaaga gaaagaactg agtttgtatg
     1441 aacaaagttt tctagaattt gaatccaata aagcatattt ggatactaaa aaaaaaaaaa
     1501 aaaaaaaaaa aaaa
//
