LOCUS       NM_001109563            1116 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 1 open reading frame
            146 (C14h1orf146), mRNA.
ACCESSION   NM_001109563 XM_001072809
VERSION     NM_001109563.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1116)
  AUTHORS   Ersland,K.M., Havik,B., Rinholm,J.E., Gundersen,V., Stansberg,C.
            and Steen,V.M.
  TITLE     LOC689986, a unique gene showing specific expression in restricted
            areas of the rodent neocortex
  JOURNAL   BMC Neurosci 14, 68 (2013)
   PUBMED   23844656
  REMARK    GeneRIF: This study identified distinct sets of differentially
            expressed genes. One of these genes, namely the hypothetical
            protein LOC689986 (LOC689986), was of particular interest, due to
            an almost exclusive expression in the temporal cortex.
            Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000014.1.
            
            On May 19, 2023 this sequence version replaced NM_001109563.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.55632.1,
                                           SRR26360181.2304702.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-394               JAXUCZ010000014.1  2394933-2395326     c
            395-506             JAXUCZ010000014.1  2385996-2386107     c
            507-600             JAXUCZ010000014.1  2381702-2381795     c
            601-769             JAXUCZ010000014.1  2379095-2379263     c
            770-848             JAXUCZ010000014.1  2378654-2378732     c
            849-1116            JAXUCZ010000014.1  2376358-2376625     c
FEATURES             Location/Qualifiers
     source          1..1116
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14p22"
     gene            1..1116
                     /gene="C14h1orf146"
                     /note="similar to human chromosome 1 open reading frame
                     146"
                     /db_xref="GeneID:689986"
                     /db_xref="RGD:1586315"
     exon            1..394
                     /gene="C14h1orf146"
                     /inference="alignment:Splign:2.1.0"
     exon            395..506
                     /gene="C14h1orf146"
                     /inference="alignment:Splign:2.1.0"
     CDS             432..989
                     /gene="C14h1orf146"
                     /codon_start=1
                     /product="uncharacterized protein C1orf146 homolog"
                     /protein_id="NP_001103033.1"
                     /db_xref="GeneID:689986"
                     /db_xref="RGD:1586315"
                     /translation="MSMDGRGGKERAKWTTTIIISSSLKSNEIATALESRSHKVRYSD
                     TLESGSIVFSLSGVAFLLMDAKACMTSAEEVFLTKIEKFINIHQNSFLVLFAPLHGPE
                     ERNLMFRIHQRSLGSNLRILPVHNTVNAVDLMCTVAKTTSKPHIDSICYRMITTKAYI
                     IEQSPVWRTLQKIELSTDSVSPDSQ"
     exon            507..600
                     /gene="C14h1orf146"
                     /inference="alignment:Splign:2.1.0"
     exon            601..769
                     /gene="C14h1orf146"
                     /inference="alignment:Splign:2.1.0"
     exon            770..848
                     /gene="C14h1orf146"
                     /inference="alignment:Splign:2.1.0"
     exon            849..1116
                     /gene="C14h1orf146"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgggtcctca atttcacgcg aagttcttcc tttctgtgtc ctgagggaat ctttaccaga
       61 aacagcactg ggcccccgct ggaagtcccg cctcctgttt cctgcctcgg ctcattggcc
      121 gtagactttt ttattgacag ataacaatat ccactgaaca actaagaacc aaccacccca
      181 cctcttggga atggggcgtc actcttaaaa ctgcttccta acgatttggg gagccatccg
      241 gtctcttcat gctgagaagg ttcagggttt aactcaagtc ctgactggaa cagtctgtga
      301 tactggatga actgggatcg tctggggcca gcggctttct ttgaagctgt cctggaagca
      361 agttttgatg aaacagctac taaggcagtc tgagattgca gcatccttag aagctgggct
      421 tatccatcgg catgtcaatg gatgggcgtg gtgggaaaga aagagcaaaa tggacaacca
      481 ccattattat cagctcatct cttaagagta atgaaattgc aactgcccta gaaagtcgaa
      541 gccacaaggt tcggtattct gacacgttgg aaagtggatc aattgtattc tctctctccg
      601 gagttgcgtt tctgttgatg gatgccaagg cgtgcatgac atcagctgag gaagtatttc
      661 taaccaaaat cgagaagttt attaacattc accaaaatag ttttttggtt ctatttgccc
      721 cactccatgg acctgaagaa aggaatctca tgttcaggat tcatcagaga tccctgggca
      781 gtaatttacg aatacttcca gtacacaaca cagtaaatgc tgttgatctt atgtgcactg
      841 tagcgaagac tacctccaaa ccacacatag acagcatctg ctacagaatg ataacaacta
      901 aagcttacat catagagcaa agccctgttt ggagaacact tcaaaagata gaactgagta
      961 ctgactcagt gagtccagat tcacagtagt gagcatgtgt tcctctgcag gaatagcaaa
     1021 ctaattaact tatcaacttg taatgtccaa atgtagactt aagggtgttt atatttaaaa
     1081 gagtatgtat acagttaagt attattttat ttggag
//
