LOCUS       NM_001100788            2866 bp    mRNA    linear   ROD 25-APR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 1 open reading frame
            116 (C13h1orf116), transcript variant 1, mRNA.
ACCESSION   NM_001100788 XM_001058496 XM_573444
VERSION     NM_001100788.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2866)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
REFERENCE   2  (bases 1 to 2866)
  AUTHORS   Steketee,K., Ziel-van der Made,A.C., van der Korput,H.A.,
            Houtsmuller,A.B. and Trapman,J.
  TITLE     A bioinformatics-based functional analysis shows that the
            specifically androgen-regulated gene SARG contains an active direct
            repeat androgen response element in the first intron
  JOURNAL   J Mol Endocrinol 33 (2), 477-491 (2004)
   PUBMED   15525603
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000013.1.
            
            On or before Dec 17, 2009 this sequence version replaced
            XM_001058496.1, XM_573444.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence because no single transcript was available for the
            full length of the gene. The extent of this transcript is supported
            by orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.51485.1,
                                           SRR26643288.48670.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389, SAMN16676784
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-243               JAXUCZ010000013.1  44740882-44741124
            244-429             JAXUCZ010000013.1  44746532-44746717
            430-610             JAXUCZ010000013.1  44750170-44750350
            611-2866            JAXUCZ010000013.1  44751440-44753695
FEATURES             Location/Qualifiers
     source          1..2866
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q13"
     gene            1..2866
                     /gene="C13h1orf116"
                     /gene_synonym="Sarg"
                     /note="similar to human chromosome 1 open reading frame
                     116"
                     /db_xref="GeneID:498222"
                     /db_xref="RGD:1565034"
     exon            1..243
                     /gene="C13h1orf116"
                     /gene_synonym="Sarg"
                     /inference="alignment:Splign:2.1.0"
     exon            244..429
                     /gene="C13h1orf116"
                     /gene_synonym="Sarg"
                     /inference="alignment:Splign:2.1.0"
     CDS             325..2139
                     /gene="C13h1orf116"
                     /gene_synonym="Sarg"
                     /note="isoform 1 is encoded by transcript variant 1;
                     specifically androgen-regulated gene protein"
                     /codon_start=1
                     /product="specifically androgen-regulated gene protein
                     isoform 1"
                     /protein_id="NP_001094258.1"
                     /db_xref="GeneID:498222"
                     /db_xref="RGD:1565034"
                     /translation="MPKRELWPAGSCSEPVTHIGSCGSMMSTTSTHSGSSDSSYDFLS
                     AEEKECLLFLEKTIGSLEAEADSGLSTDESEPATSPQSFRALPTTTQRAPQGKPEARD
                     TQQVPVPVPKRAAQSSGPPESPSPGLRSGSYSLPRNLHLGRSQNLRKSATQTNSVSEA
                     PEVFLEEPKKGQTRQGAKTIQPPAPSQEGTPDLNTVLIPPPEAFQDITSKKAEGESPP
                     KKPGEQTHRPQGHILERSPHSQKKADMSSETMTHKATEKGWTEGPQRPQQPPTQPSQN
                     TQAEEPSLPSGVKPNIQQSLLTATKPRRLPPNIVLKSSRSSFHSHPQNWLSNHTEATD
                     SGPVSSLQEQRKARREALEKLGLPQDQDDPSLPVNKHTGSFKVKEAQAQTSSQARAPA
                     QPASPALVRGTASVAEKASSVKAITPLDSLSKGWIPAQETPPGKVGAAKSMPIPIPKA
                     SKENSSLTQSKPDPRLTLQESSIPGLRQMNFKSNTLERSGVGLSSYLSAAEKDPGGQT
                     STSLGKSPFLDKVSSSVFRNSRPRPASLGMGKDFAGIQGGKLVGLEQGQCSQQPSFKG
                     QSHDKLPRPPCVSVKISPKGIPDGHRREALKKLGLLKE"
     exon            430..610
                     /gene="C13h1orf116"
                     /gene_synonym="Sarg"
                     /inference="alignment:Splign:2.1.0"
     exon            611..2866
                     /gene="C13h1orf116"
                     /gene_synonym="Sarg"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctcctgagt cctccctgac tgaacagctg gaatgaggag tagggaggga agctgggatt
       61 ggcttagagt cagcagcagg gtgtgtccac gcggttgagg catttacctg tctaggtaag
      121 tcaggaggag gtcaaaagaa gaaaccagtt ggagacgccg ccggagaggc aagctgtctc
      181 catctctgcc ctctggaata gaagggcgtt actttcttgt cttcagaccc caactcagag
      241 aaggcccagc ttgggacatt cttcacttcc attcacttcc cctctgggag cccctttcac
      301 cacccctgtg ccttgcttca ggcgatgccc aagagggagc tttggccagc agggtcgtgc
      361 tcagaacctg tgacccacat cggcagctgt ggcagcatga tgagcaccac ctccacccac
      421 tctggatcta gtgacagcag ctacgacttc ctgtccgctg aagagaagga gtgtctgctc
      481 ttcctggaga agaccattgg ctcgctggag gcggaggctg acagtgggct ctccacagac
      541 gagtcagagc cagccaccag tcctcagagt ttccgagcac tacccaccac cacccaacga
      601 gctccacagg gaaagccaga ggccagagac actcagcagg tgccagtgcc agtgccaaag
      661 agagcagccc agtcctccgg tcctcctgag tctcccagcc caggcctcag gtcgggttcc
      721 tacagccttc ccagaaacct ccaccttggc agaagccaga acctcaggaa aagtgccacc
      781 cagactaaca gcgtctctga agcacctgag gtattcttag aggagcctaa gaaagggcag
      841 actaggcagg gtgctaagac catccagcca ccagccccat cccaggaggg tacccctgac
      901 ctgaacacag ttctcatacc cccgccagaa gctttccagg acattacatc aaagaaagct
      961 gagggagaaa gcccacctaa aaagccagga gagcagacac acaggcctca gggccacatt
     1021 ctggagagaa gtccacactc ccagaagaaa gcggacatgt cttctgaaac catgacccat
     1081 aaagccactg aaaaaggttg gacagagggg ccacagcgac cacagcagcc tcccacccag
     1141 ccatctcaga acacacaagc tgaagaacct tccctacctt caggggtcaa gccaaacatc
     1201 caacagtctc tcctcacagc cacaaagccc cgtaggctgc cacctaacat cgtcctgaag
     1261 agcagccgga gcagtttcca cagccatccc cagaactggc tgtcaaatca caccgaagcc
     1321 acagactcgg gccctgtctc ctctttgcaa gaacaaagga aagcgcgcag agaggctctg
     1381 gaaaagctag ggctgcccca ggaccaagat gatcccagtc tgcctgtaaa taaacatacc
     1441 ggtagcttca aagtcaagga ggctcaggct cagacctctt cccaggcccg ggctcctgct
     1501 cagccggcat ctccagctct ggtcagggga actgcttctg tagcagagaa agcttcctca
     1561 gtgaaggcta tcactcctct ggactctcta agcaaaggtt ggattccggc ccaggaaacc
     1621 cctccaggaa aggtcggagc tgccaagtct atgcctattc ccatccctaa agcctcaaag
     1681 gaaaacagtt ccctgacaca gtccaagcct gacccgcggc tgaccctcca agaaagcagc
     1741 atccccggcc tgagacagat gaacttcaag tccaatactc tggagcgctc aggcgtgggg
     1801 ctgagcagct atctctcggc agctgagaag gaccctggcg gccaaaccag cacgtctctg
     1861 ggaaagagcc ccttcttgga caaggtctca tccagcgtct tccgtaattc tcggccccgg
     1921 cctgcctcct tgggcatggg aaaggatttt gcaggaatcc aggggggcaa gctggttggc
     1981 ctggagcagg gccagtgctc ccaacagcca tccttcaaag gacagagtca tgacaaactc
     2041 cctcgccccc cctgtgtcag tgtcaagata tccccaaagg gcattcctga tgggcacagg
     2101 agggaggctc tgaagaaact gggactgctg aaggagtagc gttggcatgg gcatagccca
     2161 ggccaaccta ccggaagaga ctggctctgc ctagggcctt tgcagcctca cagctcaggg
     2221 ctcgcttcct tcctgtctga aaaaggaaga gactcgaggt caagcacatg tcggtactca
     2281 ggcagttgtg ttattgagta cgtgcataga tcattctgaa gatcagtctc acagcaggag
     2341 agaggggggc gcttgcgtat cactgacacc atttatataa cacagggagt cactgttcag
     2401 aactccgctc ttggttgaga ttttacaagt gtaaggttca gcctgtcccg gaactgagtg
     2461 gagcatagtg gccgaacctg agaagcaaag tcacacgaca caaaggaggt agagacagct
     2521 caaaaagatg aattacactg agcacgcgac tctggccaca tgaaatacag cccgagtttc
     2581 tgcagtagat ggagagtggc ttgcatttgc tgccagcgcc ttctagacct atcctggggc
     2641 caaggggatc cagttcagta tcttcaccca ctgccttccc ctatcatgtg tagcaggcta
     2701 acacatatgc ctgtctctag atctcatagc tcactgatat caggaggcca ctccctggtc
     2761 tgagaaagcc gaatatggcc acacactcct ccatttctac ctggaagaac tcttgtcgtg
     2821 ggcttgacga atgtgataat aaaccaggct atggcccatg atgctg
//
