LOCUS       NM_001009630            1460 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 12 open reading frame
            43 (C12h12orf43), mRNA.
ACCESSION   NM_001009630 XM_237878
VERSION     NM_001009630.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1460)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1460)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 1460)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On Mar 16, 2021 this sequence version replaced NM_001009630.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ213037.1, FQ227447.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840106, SAMN12840110
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-168               JAXUCZ010000012.1  47338192-47338359   c
            169-211             JAXUCZ010000012.1  47335442-47335484   c
            212-310             JAXUCZ010000012.1  47335167-47335265   c
            311-441             JAXUCZ010000012.1  47334855-47334985   c
            442-532             JAXUCZ010000012.1  47334052-47334142   c
            533-1460            JAXUCZ010000012.1  47332740-47333667   c
FEATURES             Location/Qualifiers
     source          1..1460
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q16"
     gene            1..1460
                     /gene="C12h12orf43"
                     /gene_synonym="C12orf43l; Custos; RGD1311899"
                     /note="similar to human chromosome 12 open reading frame
                     43"
                     /db_xref="GeneID:288704"
                     /db_xref="RGD:1311899"
     exon            1..168
                     /gene="C12h12orf43"
                     /gene_synonym="C12orf43l; Custos; RGD1311899"
                     /inference="alignment:Splign:2.1.0"
     CDS             21..854
                     /gene="C12h12orf43"
                     /gene_synonym="C12orf43l; Custos; RGD1311899"
                     /note="uncharacterized protein C12orf43 homolog;
                     chromosome 12 open reading frame 43 like"
                     /codon_start=1
                     /product="protein CUSTOS"
                     /protein_id="NP_001009630.1"
                     /db_xref="GeneID:288704"
                     /db_xref="RGD:1311899"
                     /translation="MVAPSGAMSDSESSSSDSSDAEELARCREAATPAWGLEQRPREA
                     ERPAAGTADTQAPAPQPSRRREVNQHDEDGNELQTTPEFRAYVAKKLGALLDSSIAIA
                     EVWKKTQQARLQQEAKEQQEAKEQQAAKEEQAAKKEEDGFRLFFTSVPGGHEKEASPR
                     PCRKRQPPSSSEDSDEELQRCREAAVSASDILQESAIHCPAKVEKEAEKKKLKKKAKK
                     KADADLAAATGLEQVKEAGSVNGDPVLSGTKKKKKKKAKKAREASLCPPAECAAAEPK
                     N"
     exon            169..211
                     /gene="C12h12orf43"
                     /gene_synonym="C12orf43l; Custos; RGD1311899"
                     /inference="alignment:Splign:2.1.0"
     exon            212..310
                     /gene="C12h12orf43"
                     /gene_synonym="C12orf43l; Custos; RGD1311899"
                     /inference="alignment:Splign:2.1.0"
     exon            311..441
                     /gene="C12h12orf43"
                     /gene_synonym="C12orf43l; Custos; RGD1311899"
                     /inference="alignment:Splign:2.1.0"
     exon            442..532
                     /gene="C12h12orf43"
                     /gene_synonym="C12orf43l; Custos; RGD1311899"
                     /inference="alignment:Splign:2.1.0"
     exon            533..1460
                     /gene="C12h12orf43"
                     /gene_synonym="C12orf43l; Custos; RGD1311899"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaccctttgc ggctaccaag atggtagcac ccagcggtgc catgagcgac tcggagagca
       61 gcagcagtga cagcagcgat gccgaggagt tggcgcggtg ccgcgaggcg gcaacgcccg
      121 cctgggggct ggagcagcgc ccgcgggaag cggagagacc cgcagccggt actgcagata
      181 cacaggcgcc agccccccag ccaagccgca ggcgtgaggt gaaccagcat gatgaagatg
      241 gcaacgaact tcagaccact cctgagttcc gagcctacgt ggccaagaaa ctgggagcac
      301 tgctggacag ctccattgct atcgcagaag tatggaagaa gacccagcag gccaggttgc
      361 agcaggaggc caaggagcag caggaggcca aggagcagca ggcggccaag gaggagcagg
      421 cagccaagaa ggaggaagac ggcttccgcc ttttcttcac atctgtcccc ggaggccatg
      481 aaaaggaagc ttctccaaga ccctgccgaa agcgccagcc ccccagctcc agtgaggaca
      541 gtgacgagga attgcagcgg tgccgggagg cagctgtgtc cgcttcagat attctccagg
      601 agtcagccat acactgccct gccaaggtcg agaaggaggc cgagaagaag aagttgaaaa
      661 agaaagccaa gaagaaggca gacgctgacc tggctgcagc cacaggtctg gaacaggtaa
      721 aggaggcggg tagcgtcaat ggggacccag tgttgtctgg gaccaaaaag aaaaagaaga
      781 aaaaggccaa gaaagctaga gaggcttccc tgtgcccacc agcagagtgt gcagcggctg
      841 agcctaagaa ctgactgcag gctgtaggta ggtcctgagg tcaccagctc tgaggatact
      901 aacccagggg gttagggcag agccaagcca cactccgttt ccagcttccc gcactgactg
      961 cccgcaggtg actttagttg ggcttgccca agagtgcaag caaaggagtg ggtatatggg
     1021 ggggaagtct gtgcaaggct ggaatggact tgtggttcca gaacattcca tcgcctcagg
     1081 aagtacgact cttccagctt ttgagactga atctcacagc atccatcttc ccgacctgtg
     1141 cagcctcgga tgacagttgt cttcgagaat gatggggagg ggtcttcaag ctactgaggc
     1201 cccagaaaac ttctgtacct cccccccaac ccatacagac ttaatagcat tgtctggaag
     1261 agaaggaaag atatccccca cctccttctc ccccacattt gtgtgtaacg tgttaatttg
     1321 ttaataacac aggtaaacca tttcactctc tgaaaaccag gtgccagagc actgagcacc
     1381 tacttagtgg aaggaaagag aaaaagggaa ataaattatc aggtgaccca gactagtact
     1441 gtgtcctggt cagtaccaac
//
