LOCUS       NM_001398864            5183 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 3 open reading frame
            70 (C11h3orf70), mRNA.
ACCESSION   NM_001398864 XM_579785
VERSION     NM_001398864.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5183)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000011.1.
            
            On Dec 27, 2021 this sequence version replaced XM_579785.7.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643287.27330.1,
                                           SRR26643299.48846.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-355               JAXUCZ010000011.1  92850327-92850681
            356-5183            JAXUCZ010000011.1  92895781-92900608
FEATURES             Location/Qualifiers
     source          1..5183
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q23"
     gene            1..5183
                     /gene="C11h3orf70"
                     /gene_synonym="RGD1562339"
                     /note="similar to human chromosome 3 open reading frame
                     70"
                     /db_xref="GeneID:498107"
                     /db_xref="RGD:1562339"
     exon            1..355
                     /gene="C11h3orf70"
                     /gene_synonym="RGD1562339"
                     /inference="alignment:Splign:2.1.0"
     CDS             166..906
                     /gene="C11h3orf70"
                     /gene_synonym="RGD1562339"
                     /note="UPF0524 protein C3orf70 homolog"
                     /codon_start=1
                     /product="RGD1562339"
                     /protein_id="NP_001385793.1"
                     /db_xref="GeneID:498107"
                     /db_xref="RGD:1562339"
                     /translation="MSAATAPERGWKSEKVDEAQALARSCAARRPDFQPCDGLSICAT
                     HSHGKCFKLHWCCHLGWCHCKYVYQPMTPVGQLPSTEIPARPREPTNTIQISVSLTEH
                     FLKFASVFQPPLPPDSPRYCMISDLFIDNYQVKCINGKMCYVQKQPHSQKMSPEEVSA
                     HDALISKESDTPKLGHCSSPSGSEDSGINAIGAHYVESCDEDTEEGAELSSEEDYSPE
                     SSWEPDECTLLSPSQSDLEVIETMETTV"
     exon            356..5183
                     /gene="C11h3orf70"
                     /gene_synonym="RGD1562339"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggcgcgggg aggcggcagg ccgggcccgg tcgctgctcc ctccccgggc ggctcctcgg
       61 ccagcgggtg ctcgccgcgc ctccagctct cagcctgccc gcgccctgcc cgccccgcgc
      121 ctccgctcta tcccgggctc cgggcccctc tcgtcaccgg cagagatgag tgcggccacg
      181 gcgcccgagc gcggctggaa gagcgagaaa gtggacgagg cgcaggccct ggcgcggagc
      241 tgcgccgccc gtagaccgga cttccagccg tgcgacgggc tgtccatctg tgccacgcac
      301 agccacggca agtgcttcaa gctgcactgg tgctgtcacc tgggatggtg tcactgcaaa
      361 tatgtgtatc agcctatgac ccccgtggga cagcttccaa gcacagagat ccctgcaagg
      421 ccgcgagagc ccaccaacac cattcaaatc tccgtctcgc tcactgaaca ctttttgaaa
      481 tttgcgtctg tcttccagcc tccgctcccc cctgactcgc caaggtactg tatgatttct
      541 gatctcttca tcgacaacta tcaggttaaa tgtattaacg ggaagatgtg ctacgtgcag
      601 aagcagcccc attcccagaa gatgagccct gaggaggtct ctgcacacga tgccttaatt
      661 tctaaagaga gcgacactcc gaaactgggt cactgctcct ccccttccgg ttccgaggac
      721 tcggggatca atgcaattgg ggctcactat gtggaatcct gtgacgagga cacagaagaa
      781 ggggcagagc tgagttccga ggaagattac agccccgaga gcagctggga acccgatgag
      841 tgcaccctgc tctccccatc gcagtcggat ctggaagtga ttgaaactat ggagaccact
      901 gtgtaggcag ctgggaactg cagccgggga ccaccctgag cttcttctgt tctttgattt
      961 gacgagtcct tttccaatcc ttttggcatt ttccaagccc cattactaac cgtagcagtc
     1021 cagtggtctg cttagtgttc cccttatatt attaccttgt aatgacattg tttctttttg
     1081 tatcttgctt tctatgtagc atctggtgtc atgagttgtg acccagcctt aatttcactg
     1141 agaactttga gagcggtggt gaccacaaag tgtcataggt cacatggcag agctccccag
     1201 agtggaagta accatatttt cccagtagcc tgtcctctgt ggtgaaggct cttgctcagc
     1261 tcagcctccc tttggcttgt catgtgacat ctctgtcctg tttcggggtt ggggggagca
     1321 actcacttct ggaaacagtg cagcggccag tgttccctcc ctccctcttc tgtttgccac
     1381 ccacatcggc tcaggacaag agtagcctct gctacttcta gaaggtccct tttgactcct
     1441 ggtgatggcc gtgtcacagc ctctgtgact gaaaggctct ccagtttgtg tccagtccag
     1501 cggggattta ggacaggaca caaatcaagc agcttgcttt gccgggaggc tgttgggatc
     1561 aggggaagaa gaggtggact cagcctgggc tggctgagaa agttgctaca gtgtctgtgc
     1621 tgcccccggg tgggctccac agcgtccact gcccttctcg atggtttttc agttcaggga
     1681 gaagcattta ggtttcatag gtattatatg taggaggtaa cacatctgac atcttaagaa
     1741 aaaaaaatac acacacacta gttttagtta gcatgaaaat gctaagagac agaagtcctt
     1801 tagggattag gaatgaatct aataggtttg atcgattctg cttcgcttgg ttgtatgaag
     1861 cattagaatg gcttagacga gaaatggact agaattttgt acgatgcatg gattttatgc
     1921 aaatgcaaaa acagttggga tagctcactg ctgagtcagg aaggtgtttt aggtaacact
     1981 tcttcgagtt actacactgg aatccgcact cgttgtgcgt attctctcat gcacacaaaa
     2041 tagtgagtaa ttcttacgta gctttcttcc aaactctatt cctgatttgc tgtcaaccgt
     2101 gtattctcat gtgatcttag gtgccatttc ccaaaaccta tctgtgaggc gtagtgcaga
     2161 cctgggcttt ttacatatgt tgtcataaaa agagtcacag agctgccaag agggccgcct
     2221 cagatcctag ctctctgagc gggcaccatg gccttgctgc gtctgtgcag tccgcatctc
     2281 tgtacatccc tcagtcagat tagtatgtgc tgcaggcaag gagacgatgc tccctcggcc
     2341 tccccgtttg ggggttcttc gctatgtact caaggaaaaa aatctgcttc ctcagttgga
     2401 tatggagtcc cagtgattac tactagaacc ttctttaggc tgacaagccc aaacacccag
     2461 tgttcagaag gcagaatgtg ttccttcctc tggaaagcat tagttagaat gccccatgtg
     2521 agaccagact gtagcaaaac cccccacata cttaaaagcg agaactcaca ccaaggacta
     2581 gcaggcacag ggagggtagg tgggagccac catatcttgg ctgttgggca attctgctgg
     2641 cctgggatgg cctggtgaca tcaggtgggc cctacctgag gattgtggtg cccctctggc
     2701 atggcaacga aacatatgag ccacatatcc ctcatcctac acttggagct gtgatggcag
     2761 cagtagcacc agcctcaaac atgggggagc gcctcagacc cagaggtgga gaggcagaag
     2821 cttacacagc agggctcaca cagcagggct cacacagcag ggcccacaca gcagggccca
     2881 cacagcaggg ctcacacagc agggctcaca cagcagggct cacacagcag ggcttactcc
     2941 tgcacctttc ttatctactt ctttgctaca ggaccactgc cgtgaatact gaactagcta
     3001 gggtctagaa cccgggctcc aaagccatga gaacacgtgc ttatagccaa agttggctgt
     3061 gtattgggtt tggtcccttt atcagtaaca tctgtgactt tcgtccaggg tcctgttttc
     3121 taaactcctg aaactgccac tcagatttgc caccattgtg acggaatttt ttggacttaa
     3181 taacaattga tgatcgcatt aaatatttgc acaatctctt tacaattaca ctcactaagc
     3241 ttcacttgcc gttttataaa attggacacg ttcccttgcg ttcttggatc tcaaaacagc
     3301 gttttctaaa taagcacagc cgagaggctt ttggtttttc tcctaacagt gttcatacca
     3361 gtaactgtct gaaaaaaatg attaagccag aattatttct ctatgcttgc attctgaagt
     3421 cagctgaaaa gactataaaa aatgtatagc ttaactgcaa ttctaggcct attctgttct
     3481 atgttctatg aaagaatttc tctataatcc tgatattaca gtgctgattt gtatatgcgt
     3541 attcataggc actttagaaa tacttagaga ccacatgcac catagtcagt aagcacagtc
     3601 gtgttaaata ggcgtttgac gaacatgtgt acagtgagag agacgaaagc ttgcagcctg
     3661 gaccttacag gatgctggcc tggagccagg cttggaccac gtggatgggt ttctgtggga
     3721 ttctggcgct gttaccactt ctgaaaggct gttgtctacc agtgtaatcc cactaaaatg
     3781 tggagtatac ttttcttacc taaccaagac tttaagtttc aagtgtgtcc ataacttttt
     3841 ttgagaagtg acaaagcaat taaagtcctt tttgggataa ctatttggta tctttaaaaa
     3901 aaaacaaggc tttatttcaa aacctaggtt tttttttttt cctttaacat ttaaggagta
     3961 atatgagaat tttgaggaca accctgaaga aaaagttgtt ttcctagaag aaaaagctca
     4021 tgcctcgagg cgacacagta cagaatgact aaaacctgag ccacagtgtc caaacacaac
     4081 acagcacggc acaagtgtaa tacagtacag agccagtgtc ccaacgggac acagtgtaac
     4141 acaacacaac acagtataat aacgaaatac caacacaaca ctgagccacc aagtccggaa
     4201 caaccacaag gctgttttct gatgagtctt cagctatgtt ctagggtctg gttatctctt
     4261 ttacttctta gcctcacctg cttgcctgat cgaaataact cgaacttcta gggttgacca
     4321 aaacaaattg ttcttatgca aatttgattg caaccagaca cttgagaaag tcataatatc
     4381 catataggca tggtagtgta gataccgcca tgtaagacaa aaaaaaaaaa aaaaaaaagc
     4441 acacattgaa gtaaaatact atttatgtta tctgctcttg attgcccctg aattatattt
     4501 gcaaaacttt attgtcatgg tcttggcttt ttactggagg aaaataccct aactggtctc
     4561 tttccttccc gtttgtccaa cggtgctgtg aattagaaca gtgggtggag ttgggtagcc
     4621 tggggctttg tggggagtgt gtgactgcgc tccttttctg ttccacacag cccagaacac
     4681 catcttaaac ctcagtataa acacaagggc atttctcaaa aggaatttgt ttttaaattt
     4741 caccttgtcg taactatggt gcctgagaat gggtgcacca gaagggcggg tgcaccggaa
     4801 gggcgggtgc accggaaagg gcgggtgcac cggaagggcg ggtgcaccgg aagggcgggt
     4861 gcaccggaag ggcgggtgca ccggaagggc tggtacagtc cagggaggag ctgtttgctg
     4921 ctgtttgctg ctgacggtaa ggcagttgga agcctgtctg gggtttgaat ggcacctcca
     4981 ggtcaccgtg tttgcacatg tgttaaggct gtctgtacct tgcagtagtc acctgctgtg
     5041 ctgggttctt ttgaatctgt tttgaagttt aagcacaatg ttgacccttc tgtaatttcc
     5101 taaaattaca ttgttttcct aagacagctc aactttagga aaatactgct gtacaataaa
     5161 cgtgattttc ttttctacta gaa
//
