LOCUS       NM_001109050            1712 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus similar to human chromosome 17 open reading frame
            58 (C10h17orf58), transcript variant 1, mRNA.
ACCESSION   NM_001109050 XM_001081584 XM_006247638 XM_573212
VERSION     NM_001109050.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1712)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On or before Mar 3, 2022 this sequence version replaced
            XM_006247638.3, NM_001109050.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760400,
                              SAMEA5760433 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-73                JAXUCZ010000010.1  92472779-92472851
            74-172              JAXUCZ010000010.1  92472975-92473073
            173-631             JAXUCZ010000010.1  92474869-92475327
            632-826             JAXUCZ010000010.1  92475423-92475617
            827-1712            JAXUCZ010000010.1  92476445-92477330
FEATURES             Location/Qualifiers
     source          1..1712
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q32.1"
     gene            1..1712
                     /gene="C10h17orf58"
                     /gene_synonym="RGD1565033"
                     /note="similar to human chromosome 17 open reading frame
                     58"
                     /db_xref="GeneID:498014"
                     /db_xref="RGD:1565033"
     exon            1..73
                     /gene="C10h17orf58"
                     /gene_synonym="RGD1565033"
                     /inference="alignment:Splign:2.1.0"
     exon            74..172
                     /gene="C10h17orf58"
                     /gene_synonym="RGD1565033"
                     /inference="alignment:Splign:2.1.0"
     CDS             97..1017
                     /gene="C10h17orf58"
                     /gene_synonym="RGD1565033"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; UPF0450 protein C17orf58 homolog"
                     /codon_start=1
                     /product="UPF0450 protein C17orf58 homolog isoform 1
                     precursor"
                     /protein_id="NP_001102520.2"
                     /db_xref="GeneID:498014"
                     /db_xref="RGD:1565033"
                     /translation="MTARALWLLCLIVGWSPEAPLAERKAPPPHRKPDARETPGPRAQ
                     PLPEFARRPRAAYAGPRAWPDPRRRKAAPPADNRAGFREAVRAPAGLPGPRLAQAENR
                     ASPPEDSPRRARARAPRPPGSRVTGPAHPNRPRAAAQPSGTPQALSPEDGEPETQSCA
                     RACNADADEREAYCASEFAAVNGIVHDVDVLGAGMRLVTLLVDPDGLYKMSRLYITPD
                     GFFFRVHILALDSSSCHKPCPEFKPGSRYIVMGHIYHKRRQLPSALLQVLRGRLRPGD
                     GLIQGSSSYVKRFNRKHEWQVRGATHTRCI"
     exon            173..631
                     /gene="C10h17orf58"
                     /gene_synonym="RGD1565033"
                     /inference="alignment:Splign:2.1.0"
     exon            632..826
                     /gene="C10h17orf58"
                     /gene_synonym="RGD1565033"
                     /inference="alignment:Splign:2.1.0"
     exon            827..1712
                     /gene="C10h17orf58"
                     /gene_synonym="RGD1565033"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cccagtcggg accacacatc cgacccccct cggaaagagg gcgagatcac cgccgctccg
       61 ttttgtttca atgcccgggg aaccctgtct acaaaaatga cagctcgagc cctctggctt
      121 ctctgtttga tcgtcggatg gtcccccgaa gccccgttgg cggaaagaaa agcccctccg
      181 cctcaccgaa agcccgacgc ccgggagacg ccgggcccgc gcgcgcagcc gctgccggag
      241 ttcgcacgcc gaccgcgcgc cgcctacgca ggaccgcgtg cctggcccga cccccggcgc
      301 cggaaggccg cgccgcccgc cgacaaccgc gccggcttcc gggaggcagt gagagcgccc
      361 gcggggcttc cgggcccgcg cctcgcgcag gcggagaacc gcgcgtcgcc gcccgaggac
      421 tccccgcggc gcgcgcgcgc tcgggctccg cgacccccgg gctcgcgcgt cactggcccc
      481 gcccacccga accggccgcg cgccgccgcg cagccctcag gaaccccgca ggctctgtcg
      541 cccgaggacg gggagccgga gacccagtcc tgcgcgcgcg cctgcaacgc ggacgcggac
      601 gagcgcgagg cctactgcgc cagcgaattc gcagccgtga acggaatcgt gcacgacgtg
      661 gacgtgttgg gcgcgggcat gcgcctggtg actctactgg tggaccctga cggcctgtac
      721 aagatgagcc gtctgtacat cactcccgac ggttttttct tccgcgtgca tatactagcc
      781 ctggactcct ccagttgcca taagccgtgt ccagaattta aacccggaag caggtatatt
      841 gtgatgggcc acatctacca taagagacgg cagctcccca gtgctctgct ccaggtccta
      901 agagggcgcc tgcgtccagg agacgggctc atccagggta gcagcagcta cgtgaagagg
      961 tttaaccgaa agcacgagtg gcaggttcgc ggtgccaccc acacccggtg catttgaaca
     1021 ggccaacgtg gcattcgtgg ttggtcttta catggtggga agcgtctgtg aaactggccc
     1081 cgcagctagc taccttcctt gtgaactact tgtgaagctt actaaagcta ccactttatt
     1141 tacaaaatgc tgacaggagt gcaccagggc atggtgggaa agctcctcaa gctcagtaat
     1201 gcacacgact cagacactag acccccgcag gtcaaacaga tcacaccact tttgctgtct
     1261 ttaagttatt ttaatttaat acattttccc cagtagagac agttcacaaa acatttctcg
     1321 gatttaaata tacagctttg aatagtatct atcatgtgtc aagccagatt ttgtatttaa
     1381 agcatcgagt gttaaattcc acacacggag agtgagcgtt ccgagtcaag tcgtttacat
     1441 atgaaatgtc atataagtca aacgccagcc aagtgcgaaa actatacatt tcaagggcta
     1501 attcaagcaa agcatcattc aagttgtgtt cctggtgcac caaaatacga gcccctgtgt
     1561 attgtcatgc ttccttgctt ctaataacct gttctgtgcc aaactggcat caattccaac
     1621 aaattctttt tggtgtatct gatgtcattt ttatgttaag acccagtagt atcatgattg
     1681 tttgtaaagc agtaaatctc gccatgaaat ca
//
