LOCUS       NM_001025277            2207 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus BUD13 homolog (Bud13), mRNA.
ACCESSION   NM_001025277 XM_238540
VERSION     NM_001025277.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2207)
  AUTHORS   Zhang,X., Yan,C., Zhan,X., Li,L., Lei,J. and Shi,Y.
  TITLE     Structure of the human activated spliceosome in three
            conformational states
  JOURNAL   Cell Res 28 (3), 307-322 (2018)
   PUBMED   29360106
REFERENCE   2  (bases 1 to 2207)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC097995.1.
            
            On Jul 13, 2005 this sequence version replaced XM_238540.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC097995.1, SRR8487227.131663.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2207
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q22-q23"
     gene            1..2207
                     /gene="Bud13"
                     /gene_synonym="RGD1308076"
                     /note="BUD13 homolog"
                     /db_xref="GeneID:300687"
                     /db_xref="RGD:1308076"
     exon            1..150
                     /gene="Bud13"
                     /gene_synonym="RGD1308076"
                     /inference="alignment:Splign:2.1.0"
     CDS             8..1918
                     /gene="Bud13"
                     /gene_synonym="RGD1308076"
                     /codon_start=1
                     /product="BUD13 homolog"
                     /protein_id="NP_001020448.1"
                     /db_xref="GeneID:300687"
                     /db_xref="RGD:1308076"
                     /translation="MAAAPPLSKAEYLKRYLSGTDAGLEGGPESGRKRRKKRPKPGGA
                     GGKGMRIVDDDVGWAAISTDKLEKEEEEDGDLPVVAEFVDERPEEVKQMEAFRSSTKW
                     KLLGGYSEDGHFHNDDQDPSPPRKARHDTPDASPPRRVRHGTPEPSPPRRVRHDTPDP
                     SPPRRVRHDSPDPSPTRRGHDSPDPSPTRRVHHDSPDPSPPRRVRHDTPDPSPPRRVR
                     HDTPDPSPPRRVRHDSDASPPRRSHRNSSAVSPKRGHHGSSGTSSPRQAHNHSPAAAQ
                     HRRTLDSSGAQHHRRARHDSPDLELPKAKSSKAAERPSSKTVSQSGLGPPHPSLSMNS
                     KYEHDSDLSPPRKRQAKAHFGAKKQLDSKGVCQKASDSDLSPPRKNSKSGHQDSDSDL
                     SPPRNRPRRQSSDSDLSPPRRRQRTKSSDSDLSPSRRSPRSGKKTPHMYSGAKTGLVA
                     DVQREHQELKKQDQDATDLGAQFEFTETVFRDKSGRKRNLKLERLEQRRKAEKDSERD
                     ELYAQWGKGLAQSRQQQQNVEDAMKEMQKPLARYIDDEDLDRMLREQEREGDPMANFI
                     KKNKAKENKNKKVRPRYNGPAPPPNRFNIWPGYRWDGVDRSNGFEQKRFARLASKKAV
                     EELAYKWSVEDM"
     exon            151..241
                     /gene="Bud13"
                     /gene_synonym="RGD1308076"
                     /inference="alignment:Splign:2.1.0"
     exon            242..326
                     /gene="Bud13"
                     /gene_synonym="RGD1308076"
                     /inference="alignment:Splign:2.1.0"
     exon            327..1097
                     /gene="Bud13"
                     /gene_synonym="RGD1308076"
                     /inference="alignment:Splign:2.1.0"
     exon            1098..1315
                     /gene="Bud13"
                     /gene_synonym="RGD1308076"
                     /inference="alignment:Splign:2.1.0"
     exon            1316..1418
                     /gene="Bud13"
                     /gene_synonym="RGD1308076"
                     /inference="alignment:Splign:2.1.0"
     exon            1419..1557
                     /gene="Bud13"
                     /gene_synonym="RGD1308076"
                     /inference="alignment:Splign:2.1.0"
     exon            1558..1742
                     /gene="Bud13"
                     /gene_synonym="RGD1308076"
                     /inference="alignment:Splign:2.1.0"
     exon            1743..1824
                     /gene="Bud13"
                     /gene_synonym="RGD1308076"
                     /inference="alignment:Splign:2.1.0"
     exon            1825..2164
                     /gene="Bud13"
                     /gene_synonym="RGD1308076"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgctgccatg gcggcagctc cgccgctctc caaggctgag tatctgaagc gttacttgtc
       61 tgggacagat gctggcttgg aaggaggtcc agagtccggt cgcaagcggc gcaaaaaacg
      121 gccgaagccg ggaggcgctg gcggcaaggg aatgcggatc gttgatgatg atgtgggctg
      181 ggcggctatc tctaccgata agctagaaaa ggaggaggag gaggatggag atttgcctgt
      241 ggtggccgag tttgtggatg agcgtccaga agaggtaaag cagatggagg ccttccgctc
      301 cagtaccaag tggaagcttc tgggaggcta cagtgaagat ggacattttc ataatgatga
      361 ccaagatcca tctcctccca ggaaggcccg tcatgatacc ccagatgcat ctcctcccag
      421 gagggtccgt catggcaccc cggagccatc tcccccaagg agggtccgcc atgacacccc
      481 ggatccttct cccccaagga gggtccgcca tgacagcccg gatccatctc ccacaaggag
      541 gggccatgac agcccggatc catctcccac aaggagggtc caccatgaca gcccggatcc
      601 atctccccca aggagggtcc gccatgatac cccagatcca tctcccccaa ggagggtccg
      661 ccatgacacc ccggatcctt ctcccccaag gagggtccgc catgactcag atgcttctcc
      721 ccccaggagg tctcatcgta attcttcagc tgtatctcct aagagaggcc atcatggttc
      781 ctcaggcacc tcatccccaa gacaggccca taaccactcc cctgctgcag cccagcatag
      841 aaggactctt gactcttctg gtgcgcagca ccacaggagg gcccgtcacg attcccctga
      901 tttggaactg cctaaagcca agagtagcaa agctgcagaa agaccctcta gcaagacagt
      961 atcccagagt gggctaggac ccccacaccc atcactctcc atgaacagca agtacgagca
     1021 tgactctgac ctttctcctc cacggaaacg gcaagcaaag gcccattttg gagccaagaa
     1081 gcagcttgac tctaaaggtg tctgccaaaa agcatctgat tcagatcttt ctcctccacg
     1141 gaaaaacagt aagtcagggc accaggattc tgattcagat ctgtcaccac cacggaatag
     1201 accaagacgc caaagctctg actctgacct ctctccacca cggagaagac agaggaccaa
     1261 atcttccgac tctgacctct ctccatctcg aaggagtccc cgttctggga agaagactcc
     1321 acacatgtat tccggagcaa aaactgggtt ggtcgccgat gttcagcggg agcatcagga
     1381 gctcaagaaa caggaccaag acgccaccga cctcggagct cagtttgaat tcactgaaac
     1441 tgtatttcga gacaagtctg gtcggaagag gaatttgaag ctggagcgct tggaacagag
     1501 gagaaaagca gagaaagact cagagcgaga tgagctgtat gctcagtggg ggaaagggct
     1561 tgcccagagc cggcagcagc aacagaatgt agaagacgca atgaaggaga tgcagaaacc
     1621 tctggctcgc tacatagatg atgaagatct agatcggatg ctgagagagc aagaaagaga
     1681 aggggacccg atggccaact tcattaagaa gaataaagct aaggagaaca agaataagaa
     1741 agtgaggcct cgctacaatg gtcctgctcc tcctcccaat agattcaaca tttggccggg
     1801 gtatcgctgg gatggagtgg acagatccaa tggctttgaa cagaagcgct ttgccaggct
     1861 tgccagcaag aaagctgtgg aggagcttgc ctacaagtgg agtgttgagg acatgtgacc
     1921 tcctgaggcc gtgcgatgct gaggtgcctg tagcagcacc tcgcacccag ctctaatgga
     1981 gtcttgctaa gagacacgga cagcaacttg ctgtcactct gacctttggg ctagacacct
     2041 aatcttggct gtgtcctatg tgtctgttgt tttggcagga cacggtgact tctttatccc
     2101 agtgtttgtt cttggccagt gcttttcttt ttcttaaaaa taaacacata tttatttttt
     2161 gtaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
//
