LOCUS       XM_039087158            2196 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus butyrophilin-like 9 (Btnl9),
            transcript variant X1, mRNA.
ACCESSION   XM_039087158
VERSION     XM_039087158.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087158.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2196
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2196
                     /gene="Btnl9"
                     /note="butyrophilin-like 9; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     ESTs, 6 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 19 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:684480"
                     /db_xref="RGD:1590287"
     CDS             368..1957
                     /gene="Btnl9"
                     /codon_start=1
                     /product="butyrophilin-like protein 9 isoform X1"
                     /protein_id="XP_038943086.1"
                     /db_xref="GeneID:684480"
                     /db_xref="RGD:1590287"
                     /translation="MADFSVLLGFLKQTPWCLTIFFTYLLFLQLWEVNSDEVWVLGPE
                     ESILARVGEAVEFPCRLSSYQDAGYMEILWFRTQVSNVVYLYQEPQGRSNPQMAQFRN
                     RTLFEAYDIGEGSVNLHILSVVPSDEGRYGCRFLSHNFSGEATWELEVAGLGSDPHIS
                     LEGFNGEGIQLQCSSSGWYPKPKVQWRGHQDQCLSPESEDITQNAQGLFSLETSVIVR
                     GGTHSNVSCIIQNPLLPQKKEFVLQIADVFLPRTSPWKKAFVGTLVVLPLCLVALAVL
                     ALRYFYKQRRFQENRVKQGEQDREKLQTELDWRRSEGQAEWRAAQQYAVDVTLDPATA
                     HPSLEVSNNRKSVSSRLGVPSTAAGDPQRFSEQTCVLSRERFSSGRHYWEVHVGRRSR
                     WFLGACLESVERSGPARLSPAAGYWVMGLWNRCEYFVLDPHRVALALRVPPRRVGVLL
                     DYEAGKLSFFNVSDGSHIFSFTDTFSGTLCAYFRPRAHDGSEHPDPMTICSLPVRGLQ
                     INEENDNDNWLQPYEPLDPAW"
ORIGIN      
        1 tctgatgaag ttcctgggca cctttggcct ctttttaaga ccctagaagg acattttcta
       61 tggaaactta gcttgagatc tttttccaca gggacgggat gtgacggaga cttccttgtt
      121 ttgttctatc tatctgggtt tttataacaa agggcagaac caatagatgg aaggtaggtg
      181 agtaattctg tcaccagtga gccgcatccc cttcctgaac tcagctgcca gcccacgtct
      241 aatgcatctt agcatcaggg cctagcactt cacaatcacc ccctttagag ggacgtgaga
      301 ctgccagcat ccctctaaca cttggacctt ctgctgttac ctgaaaggtg gccctcaccg
      361 ctgacagatg gcagatttct cagtattact ggggtttctg aagcaaacac cttggtgcct
      421 caccatcttc ttcacctacc ttctcttcct tcagttgtgg gaggtgaact cagacgaggt
      481 ctgggtgctg ggccctgaag agtccatttt ggcccgcgtc ggggaagcgg tggagttccc
      541 atgtcgcttg tcatcgtacc aggacgcagg ctacatggaa atcctctggt ttcggaccca
      601 ggtctccaac gtggtgtacc tgtaccagga gccgcaggga cgttcgaacc cacagatggc
      661 gcagttccga aacaggacct tatttgaagc ttatgacatt ggcgagggca gcgtgaacct
      721 gcatatcctt agcgtggttc cctccgatga gggtcgatat gggtgccgct ttctttccca
      781 caacttctct ggtgaagcca cgtgggagct ggaagtagca ggattgggct cagacccaca
      841 catctccctc gaaggcttca atggagaagg cattcagttg caatgcagtt ccagtggctg
      901 gtaccccaag cccaaggtcc agtggagagg ccaccaggat cagtgccttt ctccagagtc
      961 tgaagacatc acccagaatg cccagggcct attcagtctg gagacatctg tgattgtccg
     1021 aggagggact catagcaacg tgtcttgtat aatccagaac cccttgctgc cccagaagaa
     1081 agagttcgtg ctccagattg cagatgtctt cctacccaga acatcaccct ggaagaaagc
     1141 gtttgtggga accctggtgg tcttgccact ctgtctggtc gcgcttgccg tgctggcgct
     1201 gcggtacttt tacaagcagc ggcgctttca agaaaaccgg gtgaagcagg gagagcagga
     1261 ccgagagaaa cttcagacag agcttgactg gagaaggtcc gaaggccagg ctgagtggag
     1321 agcagcccag caatatgcag tggatgtgac cttggatcct gccacagcac accctagcct
     1381 ggaggtctcc aacaaccgca agagtgtgtc ctcccgcctg ggagtgccca gtaccgcagc
     1441 cggcgacccg cagcggttct cagagcagac atgtgtgcta agccgggagc gcttctctag
     1501 tggccgccac tactgggagg tgcacgtagg cagacgcagc cgttggtttc tgggcgcctg
     1561 tctggaatcc gtggagcgct cagggcctgc gcgcctaagc ccggcggccg gctactgggt
     1621 gatggggttg tggaaccgct gcgagtactt cgtgctagac ccgcatcgcg tggcactagc
     1681 gctacgcgtg cctccccgga gggtgggcgt cctgctggac tacgaggcgg ggaagctgtc
     1741 cttcttcaac gtgtccgatg gctcgcacat cttcagcttc accgacactt tctccgggac
     1801 gctctgcgcc tacttcaggc cccgagccca cgatggtagt gaacaccctg atcctatgac
     1861 catctgctct ttgccggtta gaggactaca gatcaacgaa gagaatgaca atgacaactg
     1921 gctacagccc tacgagccct tggacccggc ctggtaatga ggcactgcca tgacctcaag
     1981 gccaggttca tgcattgttc tgaacttctg gacagcgctt tgctcttctg cagccaaagc
     2041 atgcaggggg ttagcagaaa ggacaaagag agggtctata cagacgcacg aatataatta
     2101 tctttaaata gaaaaatgag agttcgtttg tgtatataga aggattctgg agtgtgcagt
     2161 gtaggaaatg agaaagaaat aagaattatc cgttaa
//
