LOCUS       NM_001166344            1770 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus butyrophilin, subfamily 3, member A2 (Btn3a2),
            mRNA.
ACCESSION   NM_001166344 XM_001077286 XM_215321
VERSION     NM_001166344.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1770)
  AUTHORS   Hurt,P., Walter,L., Sudbrak,R., Klages,S., Muller,I., Shiina,T.,
            Inoko,H., Lehrach,H., Gunther,E., Reinhardt,R. and Himmelbauer,H.
  TITLE     The genomic sequence and comparative analysis of the rat major
            histocompatibility complex
  JOURNAL   Genome Res 14 (4), 631-639 (2004)
   PUBMED   15060004
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from BX883043.1.
            
            [WARNING] On Nov 14, 2024 this sequence was replaced by
            NM_001166344.2.
            
            On or before Oct 21, 2009 this sequence version replaced
            XM_215321.4, XM_001077286.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA5760434, SAMN09345329
                              [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-85                BX883043.1         313682-313766       c
            86-436              BX883043.1         311935-312285       c
            437-718             BX883043.1         310344-310625       c
            719-911             BX883043.1         310038-310230       c
            912-1003            BX883043.1         308421-308512       c
            1004-1030           BX883043.1         307549-307575       c
            1031-1770           BX883043.1         306339-307078       c
FEATURES             Location/Qualifiers
     source          1..1770
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..1770
                     /gene="Btn3a2"
                     /gene_synonym="Btnl4; RGD1562488"
                     /note="butyrophilin, subfamily 3, member A2"
                     /db_xref="GeneID:294268"
                     /db_xref="RGD:1598538"
     CDS             1..1770
                     /gene="Btn3a2"
                     /gene_synonym="Btnl4; RGD1562488"
                     /note="butyrophilin-like 4"
                     /codon_start=1
                     /product="butyrophilin subfamily 3 member A2 precursor"
                     /protein_id="NP_001159816.1"
                     /db_xref="GeneID:294268"
                     /db_xref="RGD:1598538"
                     /translation="MGIYCKPSVLFQDSYLLVLTQLLCWVTTKGFRVFGPSDPVVAAP
                     GREAILPCSVSPAMSVENMEELRWFRTRFSQAVFVYRDQEEQKEEQLPQYSWRTSLVK
                     DQFHEGKAAVRIQNVQESDSGIYVCHFKQGHFREEAILELKVAAMGSAPEVYIKGPED
                     GGVCVVCMASGWYPEPQVHWRDSRGEDLPASSETLHEDAEGLFSTETSLVLRDSSVRN
                     VTCSTFNPILGQEKAMAMVIPEPFFPQASPWKAAFLVILTMMGILISGTIYLLRREHS
                     GRLKVQQKRKHLQCEKDELQTTKEDALLFTRLFEWGYFDWVLTRVCSFTAWRKAQLYA
                     DWRKEHFQACNFTLDPASAHPILNVSQDRMRVTRKDTTMCLDDLFCVLGTNGISSGRY
                     YWEVKLRNRDSSTWTLGVCREGVERKGCFSECPEKGFWTVGQSSSGYWAYVDSGRDSL
                     SIRQAPQSVGVFVDYDERNISFYNMSDKSHLFSFHEASFSGTLLPYFRLKSGNISMTV
                     SSMACVSEGQQGEEGRRGRKRSRKGRKGRRPKKGKGLALLPLKESLSPTGEEGLVPGS
                     CVVVSPSGEESPFLQDARDTLFP"
     exon            1..85
                     /gene="Btn3a2"
                     /gene_synonym="Btnl4; RGD1562488"
                     /inference="alignment:Splign:2.1.0"
     exon            86..436
                     /gene="Btn3a2"
                     /gene_synonym="Btnl4; RGD1562488"
                     /inference="alignment:Splign:2.1.0"
     exon            437..718
                     /gene="Btn3a2"
                     /gene_synonym="Btnl4; RGD1562488"
                     /inference="alignment:Splign:2.1.0"
     exon            719..911
                     /gene="Btn3a2"
                     /gene_synonym="Btnl4; RGD1562488"
                     /inference="alignment:Splign:2.1.0"
     exon            912..1003
                     /gene="Btn3a2"
                     /gene_synonym="Btnl4; RGD1562488"
                     /inference="alignment:Splign:2.1.0"
     exon            1004..1030
                     /gene="Btn3a2"
                     /gene_synonym="Btnl4; RGD1562488"
                     /inference="alignment:Splign:2.1.0"
     exon            1031..1770
                     /gene="Btn3a2"
                     /gene_synonym="Btnl4; RGD1562488"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgggaattt actgcaagcc ctctgtgctc ttccaggact cctacctcct ggtccttaca
       61 cagctgcttt gctgggtgac cacaaagggt ttccgggtct ttggtccctc agaccccgtt
      121 gtggccgcac caggtaggga agccatactt ccctgctctg tgtctccagc catgagtgtg
      181 gagaacatgg aggagctgag gtggttccgc accagattct cacaagcagt atttgtctat
      241 cgggaccaag aggagcagaa ggaagagcag ttgcctcagt attcttggcg gacctcactg
      301 gtgaaggacc agttccatga aggcaaggct gccgtgagga tccagaatgt ccaggagtca
      361 gatagtggga tatacgtctg ccacttcaaa cagggacact tccgtgaaga ggccatcttg
      421 gaactgaagg tggcagcgat gggctctgct cctgaagtgt acatcaaagg tccagaagat
      481 ggtggagtgt gtgttgtgtg catggcttca gggtggtacc cggagcccca ggtgcattgg
      541 agagactcca gaggagagga tctcccagca tcctcagaga ccctccatga agatgctgaa
      601 gggctgttca gcacagagac ctcactggtg ctgagagaca gctctgtgag gaatgtgacc
      661 tgctccacct tcaatcccat cttgggtcag gagaaagcca tggccatggt catcccagag
      721 cccttcttcc ctcaggcctc tccctggaag gcagcttttc tcgtgatcct gaccatgatg
      781 ggaattctaa tctcagggac aatctatctt ctcagaaggg aacattctgg aaggctgaag
      841 gtgcagcaga aacggaagca tcttcagtgt gagaaggatg agttacagac gacaaaggag
      901 gatgctctgc tgtttacccg actctttgag tggggctatt ttgattgggt tctcaccaga
      961 gtgtgttcat ttacagcctg gaggaaggcc cagctgtatg cagattggcg caaggaacac
     1021 ttccaggcct gtaatttcac tctggatcca gcctctgccc accccatcct taatgtctcc
     1081 caagatagga tgagagtgac ccggaaggat actaccatgt gcttggatga cctcttctgt
     1141 gtgctaggca ccaacggcat ttcttctgga agatattact gggaggtgaa gctaaggaac
     1201 agggacagca gcacgtggac tctgggggtc tgtagggaag gtgtagagag gaaagggtgt
     1261 ttttcagagt gtccagagaa ggggttttgg acagtggggc agtctagtag tgggtattgg
     1321 gcctatgttg actctgggag ggattcctta tccatcaggc aagctccgca gagtgtgggg
     1381 gtgtttgtgg actatgacga aaggaacatc tccttctata acatgagtga caagtcccac
     1441 cttttctcct tccacgaggc ttccttctct gggactcttc ttccatactt tcggcttaag
     1501 tctggaaata tctcgatgac tgtcagctcc atggcttgtg tgtctgaggg gcagcaggga
     1561 gaagagggga ggagaggaag gaaaagaagt aggaagggga ggaaggggag gaggccaaag
     1621 aaggggaagg ggttagcttt gcttcctttg aaggagtctc tgagtcccac aggggaggag
     1681 ggcctggttc caggctcttg tgttgtggtc tctccctcag gggaagaatc tccattcctc
     1741 caggatgcca gggacactct gttcccatag
//
