LOCUS       NM_001399001            2160 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus basic transcription factor 3-like 4 (Btf3l4),
            transcript variant 2, mRNA.
ACCESSION   NM_001399001 XM_345561
VERSION     NM_001399001.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2160)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Dec 29, 2021 this sequence version replaced XM_345561.9.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ099695.1, SRR26360181.2173654.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760393,
                                           SAMEA5760400 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-115               JAXUCZ010000005.1  128815448-128815562 c
            116-182             JAXUCZ010000005.1  128812388-128812454 c
            183-296             JAXUCZ010000005.1  128807894-128808007 c
            297-498             JAXUCZ010000005.1  128800588-128800789 c
            499-558             JAXUCZ010000005.1  128799531-128799590 c
            559-2160            JAXUCZ010000005.1  128796594-128798195 c
FEATURES             Location/Qualifiers
     source          1..2160
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q34"
     gene            1..2160
                     /gene="Btf3l4"
                     /gene_synonym="RGD1311774"
                     /note="basic transcription factor 3-like 4"
                     /db_xref="GeneID:366434"
                     /db_xref="RGD:1311774"
     exon            1..115
                     /gene="Btf3l4"
                     /gene_synonym="RGD1311774"
                     /inference="alignment:Splign:2.1.0"
     exon            116..182
                     /gene="Btf3l4"
                     /gene_synonym="RGD1311774"
                     /inference="alignment:Splign:2.1.0"
     CDS             129..605
                     /gene="Btf3l4"
                     /gene_synonym="RGD1311774"
                     /note="Btf3l4 protein-like"
                     /codon_start=1
                     /product="transcription factor BTF3 homolog 4"
                     /protein_id="NP_001385930.1"
                     /db_xref="GeneID:366434"
                     /db_xref="RGD:1311774"
                     /translation="MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLK
                     KLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGIL
                     SQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN"
     exon            183..296
                     /gene="Btf3l4"
                     /gene_synonym="RGD1311774"
                     /inference="alignment:Splign:2.1.0"
     exon            297..498
                     /gene="Btf3l4"
                     /gene_synonym="RGD1311774"
                     /inference="alignment:Splign:2.1.0"
     exon            499..558
                     /gene="Btf3l4"
                     /gene_synonym="RGD1311774"
                     /inference="alignment:Splign:2.1.0"
     exon            559..2160
                     /gene="Btf3l4"
                     /gene_synonym="RGD1311774"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acgtgggcct ctcccgccgc cgccgccgct gccgccgcgg tctttctctg tctcagctga
       61 ggcagccatc ttgctcttgc cgcgtgctgg tgttagagga ccctccccgc tgcagattta
      121 ccaacagcat gaatcaagaa aagttagcca agcttcaagc tcaggtccgg atagggggca
      181 aggggacagc tcgcaggaag aagaaggtgg tgcataggac agctactgct gatgacaaaa
      241 agcttcagag ttcactaaag aaactggctg tgaacaatat agctggtatt gaagaggtga
      301 acatgattaa agacgatgga acagttattc atttcaacaa tcccaaagtc caagcttccc
      361 tctccgctaa cacctttgca attactggtc atgcagaagc caaaccaatc acagaaatgc
      421 ttcctggaat actaagtcag cttggtgctg acagcttaac gagccttaga aagttagctg
      481 aacagttccc acgacaagta ttggatagta aagcacccaa accagaagac attgatgaag
      541 aggatgatga cgttccagat cttgtagaaa attttgatga agcatcaaaa aatgaagcta
      601 actaaaatct tctgggtttt ggaagctggc atggactaga tttaacaatc agctctgttg
      661 ttccaaagtt ttacagacat ggagaacatc acctgttatt agttccgtaa tataaatatt
      721 ttgtatatta atgatgctgt tttatcagca tttcttggtc attggatttt gcattttgca
      781 cttcttccca ggatcgattc ttttggtcaa aatatgaagt attggtacag gttgagggtg
      841 gtttttgttt tttggggggg acttttggtg tgtatgtata tgtatgtgtg tgggtatgtg
      901 tgtacacagt ggacagcaga ttggataaca gttatatcta tcgtatccct tcccccaata
      961 gaaataaagc aaatctttac atttgttact tttttttctc taacaaacgc tgcacataat
     1021 tgatgaaaag tgagtgtctc tgatttcaga gccgaggaga ttccttctgt tagaagtttg
     1081 gtgttaattt gttgaattaa cttcaatatt tttatacact tcaatgggtt gaaaatgtcc
     1141 tgagatattt tggcactaga ttgctccaga gtcacaagtc aggcaccttt ggtgtggcta
     1201 ccttagaccc acttcctagt cagacccata aaatgtcctt tttttaactt tcttcctggt
     1261 gccctgcctc cctgcatatt ggtcttcaaa tggactggtc agcctttgat attactcttc
     1321 tcttctgtct agtttgagac agaagttctc catatagaga gtgcctagtt cctctttgtt
     1381 cctcacctcg aggagcatct tcaatgtttt atttccctaa acatttacgg ttgatagagt
     1441 tcaaactgga atagctagca tgtgcttgct aaataacttt atactcagct tctcctattt
     1501 cctagttctt agtatcaggt gcaggggtgc ctctttttca acaaggttga atctgggaat
     1561 gtccttttga atgaaaagaa cacgtaggcc atattttctc ctagcatata taggcattct
     1621 ctgaaacggg agaatttctt caggtacttt cctattcttg gccttgaact tacctctgag
     1681 tagatctaat tgattacagc tgctcttaac accctcctgc atgctgagac taatgcccca
     1741 gggaacggtg gtaagacagt attatttgtt taccttctgt cagagaacgt ggaggtaagt
     1801 tatattcatt tactcaggct ttcctcttgc tgtttggata aaagcttgtg ttttgacata
     1861 tcagcatatt atagccaata tcttaggata aggtttaaag aatctgttgt ttcctggccc
     1921 atcaccatac taactgcagc ttaaccttca gcatgccaac ttttgtttca agctggatat
     1981 ctttccttga tacttaggat gcaagaccaa cagcatattg acagatctgt agacttgaag
     2041 gcaaatctct tgtgtttctt ttcatccaaa cattttcaat ttatttcata aatttattga
     2101 tttttccctg ttatgtttta tataatatat ggacgtaaca aaataaataa cagtacaaaa
//
