LOCUS       XM_039094453            2144 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus biotinidase (Btd), transcript variant
            X5, mRNA.
ACCESSION   XM_039094453
VERSION     XM_039094453.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039094453.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2144
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2144
                     /gene="Btd"
                     /note="biotinidase; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 15 ESTs, 3 long SRA
                     reads, 8 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 111
                     samples with support for all annotated introns"
                     /db_xref="GeneID:306262"
                     /db_xref="RGD:1305316"
     CDS             224..1831
                     /gene="Btd"
                     /codon_start=1
                     /product="biotinidase isoform X1"
                     /protein_id="XP_038950381.1"
                     /db_xref="GeneID:306262"
                     /db_xref="RGD:1305316"
                     /translation="MRRIFFPKRFTVCIMSGARTAHALVFLLGCSALALGVCSASLEH
                     GEAEYYVAAVYEHRSVLSPNPLELSSRQQALELMKQNLDVYEQQVMAAAQKGAHIIVF
                     PEDGIHGFNFTRTSIYPFLDLMPSPRLVSWNPCLEPFRFNDTEVLQRLSCMAIKGKMF
                     LVANLGTKQPCLGSDPGCPQDGRYQFNTNVAFSDNGTLVGRYRKHNLYFEEAFDSPAD
                     VDLTTFDTPFAGKFGMFTCFDILFFDPAVRLLRDFEVKHIAYPTAWMNQLPLLAAIEI
                     QKAFATAFGVTVLAANIHHPTLGMTGSGIHTPLKSFWYHNMDDPEGHLIIARVATNPQ
                     GLVGTENTTSEMDPSHRKFLKVLSGDPYCEKDAQEVRCDEAAKWNLNAPPTFHSEMMY
                     DNFTLVPVWGKEGHLQVCSNSLCCHLLFERPALSKELYALGVFDGLHTVHGTYYVQAC
                     ALVKCGGAGFETCGQEISEAEGLFDFHLWGNFSTLYVFPLFLTSGMTLDTPDQLGWES
                     DHYFLRKRGLSSGLVTAALYGRLYERN"
ORIGIN      
        1 cgggacgaga agtccgtcct tggtgaggcg atcatgcgag cacgcccatt ctccagtcag
       61 tcttttccgg actcggccat cagcgggagg cgggacgagc cggagaccgc gtcctctacc
      121 gagcaggatc agtcttcaac tggccaattt tgccatttgg caaagagaaa aatcactggg
      181 caagttactg ccttgcagtt caagaaaatc ccatgttacc actatgagaa ggattttctt
      241 tccaaagcga tttacggtct gcattatgtc tggagcccgc actgcgcatg cgctcgtctt
      301 cctcctcggc tgttctgcgc ttgcgttggg cgtctgctca gcctccctgg agcacggcga
      361 ggctgagtac tacgtggctg ccgtgtacga acaccgatcg gtcctgagcc caaaccccct
      421 ggagctcagc agccgccagc aggccctgga gctcatgaag cagaacctcg acgtctatga
      481 acagcaagtg atggctgcag cccagaaggg tgcgcacatt atagtgttcc cagaagacgg
      541 tatccacgga ttcaacttca caagaacatc catttaccca ttcttggact tgatgccatc
      601 tcccaggctg gtcagttgga acccgtgtct ggagcccttt cgcttcaatg acacggaggt
      661 cctccagcgc ctgagttgca tggccatcaa gggaaagatg ttcttggtgg ccaatcttgg
      721 gacaaaacag ccttgcctcg gcagcgaccc tgggtgcccg caggacggga gataccagtt
      781 taacacaaac gtcgcgttca gtgacaacgg aaccctcgtc ggccgctacc gtaagcacaa
      841 cctgtacttt gaggaagcct tcgatagccc tgctgacgtg gacctcacca cctttgatac
      901 gccgttcgcg ggcaagttcg gtatgttcac ttgctttgat atcctgttct ttgaccccgc
      961 ggtccggctc ctcagagact ttgaggtaaa gcacattgcg taccctacgg cctggatgaa
     1021 ccagctgccg ctcttggcag ccattgaaat ccagaaagca ttcgccaccg ccttcggcgt
     1081 caccgttctg gcagctaaca tccaccaccc gactctgggg atgacgggca gtggcataca
     1141 cacccctctg aagtcctttt ggtaccataa catggacgac cccgaaggtc accttataat
     1201 tgcccgggta gccacaaacc cacagggcct cgttgggaca gagaatacaa ctagtgaaat
     1261 ggatccgtcc cataggaagt tcttaaaagt cttgtctggg gatccgtact gtgagaagga
     1321 tgcccaggaa gtgcgctgcg acgaggctgc caagtggaac ctgaacgcac cacctacctt
     1381 ccactcggag atgatgtatg acaatttcac cctggtcccc gtctggggaa aggaaggcca
     1441 cctccaggtg tgctccaaca gtctctgttg ccacttactt ttcgagaggc ccgccctgtc
     1501 caaagagcta tatgccctgg gtgtctttga cggactccac acagtgcacg gtacctacta
     1561 cgttcaagcc tgtgccctgg tcaagtgcgg gggcgctggc tttgaaacct gcgggcagga
     1621 gatctcggag gccgagggct tgtttgactt tcatctgtgg gggaacttca gcaccttgta
     1681 tgtcttccct ttatttctca cctcggggat gaccctagac acccctgacc agctcgggtg
     1741 ggagagcgac cactatttct tgaggaagag gggactgtcc tccggcctgg tgacggcagc
     1801 tctctatggg cggttgtatg agaggaatta ggaaaactgt ggtcagcagg ttgggctctg
     1861 caggctggcc ttgccttccc acggcccaca gatcccaaac actgggaaaa ccgccccgcc
     1921 cctgtggcac tggatcccac cctggggaac tgtaagaaga tgggagaggc agttcctcct
     1981 tcctttctac ataatgactg agatattttc tggtattttc tattcacatt attctttttc
     2041 aagccacacc ctcttaccac tactacacaa ttggttttaa agactaagcc aaaaaaaaaa
     2101 aaaaaaaata aacatcagct gccattctac aaacccacgg gata
//
