LOCUS       NM_001107782            2398 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus BTB domain containing 3 (Btbd3), mRNA.
ACCESSION   NM_001107782 XM_001081301 XM_230616
VERSION     NM_001107782.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2398)
  AUTHORS   Matsui A, Tran M, Yoshida AC, Kikuchi SS, U M, Ogawa M and
            Shimogori T.
  TITLE     BTBD3 controls dendrite orientation toward active axons in
            mammalian neocortex
  JOURNAL   Science 342 (6162), 1114-1118 (2013)
   PUBMED   24179155
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473949.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001081301.1, XM_230616.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2398
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q36"
     gene            1..2398
                     /gene="Btbd3"
                     /note="BTB domain containing 3"
                     /db_xref="GeneID:311462"
                     /db_xref="RGD:1311623"
     exon            1..727
                     /gene="Btbd3"
                     /inference="alignment:Splign:2.1.0"
     CDS             384..1970
                     /gene="Btbd3"
                     /note="BTB (POZ) domain containing 3"
                     /codon_start=1
                     /product="BTB/POZ domain-containing protein 3"
                     /protein_id="NP_001101252.1"
                     /db_xref="GeneID:311462"
                     /db_xref="RGD:1311623"
                     /translation="MVDDKEKNMKCLTFFLMLPETVKNRSKKGSKKANSSSGGGSGGS
                     SGSSKLPPVCYEIITLKTKKKKKMAADIFPRKKPANSSSTTVQLQHQHNLCNNNLIPA
                     PNWQGLYPTIRERNAVMFNNDLMADVHFVVGPPGGTQRLPGHKYVLAVGSSVFHAMFY
                     GELAEDKDEIRIPDVEPAAFLAMLKYIYCDEIDLAADTVLATLYAAKKYIVPHLARAC
                     VNFLETSLSAKNACVLLSQSCLFEEPDLTQRCWEVIDAQAELALKSEGFCDIDFQTLE
                     SILRRETLNAKEIVVFEAALNWAEVECQRQDLALSIENKRKVLGKALYLIRIPTMALD
                     DFANGAAQSGVLTLNETNDIFLWYTASKKPELQFVSKARKGLVPQRCHRFQSCAYRSN
                     QWRYRGRCDSIQFAVDKRVFIAGFGLYGSSCGSAEYSAKIELKRQGVVLGQNLSKYFS
                     DGSSNTFPVWFEYPVQIEPDTFYTASVVLDGNELSYFGQEGMTEVQCGKVTVQFQCSS
                     DSTNGTGVQGGQIPELIFYA"
     exon            728..818
                     /gene="Btbd3"
                     /inference="alignment:Splign:2.1.0"
     exon            819..937
                     /gene="Btbd3"
                     /inference="alignment:Splign:2.1.0"
     exon            938..2398
                     /gene="Btbd3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cacaacttcg ccggctggcc gcactgactc gctgggctcg ccacatcttg ctaacctaat
       61 tcagaaagca agcgcctcgg ttctctgtct gcctcctttg ctcagcataa gctttccagg
      121 tgatccagaa aacggccgtt tttatgcgca aataagaaaa acaggaatca tgatgggaat
      181 gtatttaaca gatccggtcc tggataaaac ttaaaagcca gtttctcttc aacatagtga
      241 aaaggtcacc ttgcctggct gggaaaagca ggaaaatacc agcttgtcgg tttctgttaa
      301 catcttagct ccggctagcc tctttgcctt gatgttccag caaatttgcg gtatctagct
      361 ctaaagagag acatcctgta ctcatggtag atgataaaga aaagaacatg aaatgtctca
      421 ccttcttctt gatgcttcca gagacagtaa agaacaggtc caaaaaaggt tcaaagaaag
      481 caaacagcag cagtggtggc ggcagcggcg gtagcagtgg gagcagcaag ttgcccccag
      541 tttgttatga aataattacc ttgaagacta aaaagaagaa gaagatggct gctgatatat
      601 tcccccgtaa gaagccagcc aactccagca gcaccactgt ccagctgcag caccagcaca
      661 atctctgtaa caacaacctc atcccggccc ccaactggca gggtctttat cccaccatca
      721 gagaaagaaa tgcggtgatg ttcaataatg acttgatggc agatgtacat tttgtggttg
      781 ggccaccagg tgggactcag cggttgccag gacacaaata cgtcctagct gttgggagct
      841 cagtgttcca tgcaatgttt tatggagaac ttgctgagga caaagatgag atccgaatac
      901 cagacgtcga gcctgctgct ttccttgcca tgctgaaata catctattgt gatgaaattg
      961 acttggctgc agatacagtg ctggccacac tgtatgctgc caaaaagtac atagttcctc
     1021 accttgccag agcctgtgtt aatttcctgg agaccagcct aagcgccaag aacgcctgcg
     1081 tcctcctctc tcagagctgc ctgtttgagg agccggacct gacacagcgt tgctgggagg
     1141 tgattgatgc ccaagccgag ttagcactca agtctgaggg attctgtgac atcgacttcc
     1201 agacactcga aagtatcctc cgcagggaaa cgctgaatgc caaagaaata gtggtttttg
     1261 aggcagccct gaactgggct gaagtagaat gccagcggca agatctggcc ttgagcattg
     1321 aaaataaacg caaggtccta ggaaaggccc tgtacttgat ccgcatcccc accatggccc
     1381 tggatgactt tgcaaatggt gctgcacagt ccggggtatt aactctcaat gagaccaatg
     1441 acatcttcct ctggtatacc gcatccaaaa aaccagagct gcagttcgtg agtaaagccc
     1501 gcaagggcct ggtcccccag cgatgtcatc gattccagtc atgtgcctat cggagcaatc
     1561 agtggcgcta tcggggtcgc tgtgacagca tccagtttgc agttgataag agggtgttca
     1621 ttgcaggctt tgggctgtac ggctcgagct gtggctctgc agagtacagc gctaagattg
     1681 aactcaaacg gcaaggcgtt gtcctgggcc agaacttgag caagtacttc tcagatggat
     1741 ccagtaatac cttccctgtg tggtttgaat atccagtgca gattgagcca gacaccttct
     1801 acacagccag tgtagtgctg gatggcaatg aactcagcta ctttggacaa gaaggcatga
     1861 cggaagttca gtgtggcaag gtgactgtcc agttccagtg ctcctcagac agcaccaatg
     1921 gcactggtgt acagggaggg cagatccccg aactcatatt ctatgcctga acctttcttc
     1981 tcttatgcag catgaggtgc ccacatgggc cctccttgcc tgacgcttag ctcatctgca
     2041 gatatgtggt cagcacaggt aatttgtaat gaatgaagca gtaggcagtt tcttatgtct
     2101 ttgaaccttt taattatgta caggctaaaa tgcaacattc cgcttttaac tatatgctta
     2161 gaagagccaa gttcttactc aggctttgtg gttttcgagt tgcgtctgta cgcctaggga
     2221 gatcatgtgc ttttccaagt gcccaccaac ctcctacttc cgtacctctg aagaagattt
     2281 tggatcaact tgaatttcct ttaatgaatg aaaatatgta tcctaaagta gtatcattat
     2341 ttttaaacag aacccttttc tttcaataaa taaataaaga caaaaacaga aaacaggt
//
