LOCUS       XM_039080445            5416 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus BTB domain containing 2 (Btbd2),
            transcript variant X3, mRNA.
ACCESSION   XM_039080445
VERSION     XM_039080445.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080445.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5416
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5416
                     /gene="Btbd2"
                     /note="BTB domain containing 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 39
                     ESTs, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 90 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:500793"
                     /db_xref="RGD:1566094"
     CDS             2935..4458
                     /gene="Btbd2"
                     /codon_start=1
                     /product="BTB/POZ domain-containing protein 2 isoform X3"
                     /protein_id="XP_038936373.1"
                     /db_xref="GeneID:500793"
                     /db_xref="RGD:1566094"
                     /translation="MTTPSVAPPRAAATRWRPAAAGARLARRGSGRARAAWGQAPTRP
                     RPPATPPPVPRGLRRPRPRRLGPGLTRRPWARSATTRARARCCASPCTTGRPPSPRCR
                     SASPSSSTTRFVLAVGSAVFDAMFNGGMATTSTEIELPDVEPAAFLALLKFLYSDEVQ
                     IGPETVMTTLYTAKKYAVPALEAHCVEFLKKHLRADNAFMLLTQARLFDEPQLASLCL
                     ESIDKNTADAIAAEGFTDIDLDTLVAVLERDTLGIREVRLFNAVVRWSEAECQRQQLQ
                     VTPENKRKVLGKALGLIRFPLMTIEEFAAASPLPAGPAQSGILVDREVVSLFLHFTVN
                     PKPRVEFIDRPRCCLRGKECSINRFQQVESRWGYSGTSDRIRFSVNKRIFVVGFGLYG
                     SIHGPTDYQVNIQIIHTDSNTVLGQNDTGFSCDGSASTFRVMFKEPVEVLPNVNYTAC
                     ATLKGPDSHYGTKGLRKVTHESPTTGAKTCFTFCYAAGNNNGTSVEDGQIPEIIFYT"
ORIGIN      
        1 gggatctggg atcacagaat caggctgcag tttgaagaca tttcctgccc atgcaccctg
       61 tgctgccttc tgtggccatt gcatttgtgt ttttctcttt gaatactgtc ttcagaaggt
      121 tacttgtcct aatatcagtt atgtctgtct agttgttcgg tctcagtata tgttcacata
      181 tggagcatgt tgcccatccc atgatgtgtt gaatctaggt ttccaaagat gtcccccagg
      241 actgcagggc ttgccccctc cgtgtgtgtg tgtgtgtgac cctggctgtc ctggagcttg
      301 ctatgtagac caggctgacc tcgaactcac agaggtcttc ctacttctgc ctctgagtac
      361 tgggactaaa ggcgtgggtc accacagtct gtgcaggact tacaagcatt catgtaatgc
      421 tgccaccatg tatgtatcag gacattcagt tacaatcctt ccctgtccac tgctgtcttt
      481 gacactccta tgtgtcccag tgatccaatg agtcactatc aggggcttta taagcacttg
      541 aggagcaatg tcagtaatgg caggtgttta aagatggcct tctaggagag ccgccccagc
      601 ttcaatggag ggagagtatg aggggagagc cagccccttc ttcattggtc tctgttgaac
      661 ctgtttcagg atgagagtca tgagactcag gactaaggca gtcacctggt gttaattaaa
      721 ctgtggaaac ttagctctcc ttcctccccc tctgcctcct tgagtagcct cgtctacctt
      781 tgaatttgtg atccttctgc ctcagcatct tcagtgctgg ggtgaaggcg caggtgctcc
      841 acacagggac tgtccagggt agccacctcc gatgtccaca gccaacgctg tccacctgag
      901 cccgctcagg gccgtggagg ggttcctgct ggcttctgca tgcacagcgc ctcttccttg
      961 ggggcagggt gctggtgttt taccccagtc tgcattttgg agccacagag ccccacgttt
     1021 atacttttgg ggatccctgc tttacaaacc tctcactggc cccacatgcc tggggatgga
     1081 ttgacactgt tcttgtttgg ttttgttttc ctgagacagg gtctcactgt gtagccctgg
     1141 ctgtcctgca actcactctg tagacctggc tggcctcaaa ctcagagatc cccctgcctc
     1201 tgtctccgca gtactggaac cgcaagtatg acttgcattg aattttgact ggatcagcac
     1261 gctcccactc acaggctact ttccctgtcc ctcagttttg ctttctggat tattgggcag
     1321 accagctaac tggccctggg gtccagagtt tggggtctgg ggaaggggaa ctagaaaatg
     1381 taggagtcgg agttacaatc tgaggagtgt tgcccacact tggattctac ccgtgggctc
     1441 caggattcac attctgggtc tgggtcctgg aagctccagg cagagtgtgt tcagggctcc
     1501 agactcctgg ttccctccta tacctgcctc tccatgcagc ccctcaactc agttctccca
     1561 gctcccagaa accccccacc cccaccccag tgtctcttag gccttagtcc ctctcccctt
     1621 ctagctcctg ccctctctct cccatcagct cctcaggtaa gcagcacacc agctttttcc
     1681 ccctccttcc tcaggtctag cctggtctca ccttctcgtt gtacctcacc ccacttcttt
     1741 ccctcatcat cctttctggg ttcccagtcg tttgggttct taacgtttta cagcctgagc
     1801 ctgagcgggg attggctggg ctcaggggct caggcctgga ctctataaac agaggtcctg
     1861 agccctcatc gtcctcagtt cctcctgttc ctctgcctct cctacccttc ccgcatccac
     1921 catcttcata ggcctacctc tccctcttct cttccctttt ccatccctag tcctccgtca
     1981 taccaggacc cttcctctca agtccagctc tctgctgtgc ggtcccctcc tcctccctgc
     2041 cttctctcct tcagtcctcc caccggttac ttcctgctct cccctccctc ctctgtccgc
     2101 ccctctccac ctgtccacta ctcctaggcc cttccccttc ctcccttttc tcttgacttt
     2161 cctctggctt ctttcccggg ttccacccct cttcctgatc cttcctctca cctgtgctcg
     2221 gctccctcct cccactcctc ccccatctcc catttcttct ccccaggctc cactactctg
     2281 gaagccctgc ccctcatcat gctagctcta gccctcctcc ctctgctccc cactccctct
     2341 ttccctcccc tccccctcct gtcgttccgt gcttctctcc tctgtctgcc ctttacctct
     2401 ccttgcttcc cctggctctc ttcatcctcc ccctcctgcc cttgctccaa ttcagggagg
     2461 gcctaggcct ccatggcccc gactacctcc tctagctcct gtctctgtgc ctcgccgtca
     2521 ccacatcctt ctctttcctc ccatccaatc cctcccgttg ccctcctctc ggtcccagta
     2581 tccatttctc cctcccattt ccctccttcc cttttctctc tccccccctc tttcttgtct
     2641 caccaatcct gtgcctagcc ctgccacgcc catcctccct tccttcctct tcatgttcac
     2701 aatcgcttct ccctcatcct ctcctcctct cccctccctc cccatctctg cttcctatct
     2761 atcatcttcc cctggttcct ctgcacgccc ctccgccccc tagccttgcc ctttctccct
     2821 cccttctgtc cgcccagcgc ctcctccctc tttgtctcct cccctcgctc cgctcaggtc
     2881 ctgtctctct ttagccccgc ccctcccatc ctcctcttgg atgccccgcc cccgatgacc
     2941 acgccttccg tggccccgcc ccgcgcagca gcgacaagat ggcggccggc ggcagcgggc
     3001 gcgcgtcttg cccgccgggg gtcgggccgg gcgcgggcgg cctggggcca agcgccaacg
     3061 cggccgcggc ccccagcaac gccgccgcct gtgcctcggg gcctccgccg cccccgtccc
     3121 cgccgcctgg gcccgggact gacgcgcagg ccgtgggcga ggagcgcgac gacgcgggcc
     3181 cgggcgcgct gctgcgcgag cccgtgtaca actggcaggc caccaagccc acggtgcagg
     3241 agcgcttcgc cttcctcttc aacaacgagg tttgtgcttg ctgtaggcag tgctgtgttt
     3301 gacgccatgt tcaatggcgg gatggctact acttccactg agatcgagct gcccgacgtg
     3361 gagcctgctg ccttcctggc gctgctcaag ttcctgtact cagacgaagt gcagatcggg
     3421 cccgagacag tgatgaccac actgtacact gccaagaagt atgcggtgcc cgcgctcgag
     3481 gctcactgtg tggagttcct gaagaagcac ctgcgggctg acaatgcctt catgttgctc
     3541 acacaggcac ggctctttga tgagccacag ctggccagcc tgtgcctgga gagcatagac
     3601 aagaacacgg ctgacgccat tgctgccgag ggcttcaccg acattgacct ggacacactg
     3661 gtggcagtgc tggaacgaga taccctgggc attcgtgagg ttcggctctt caatgcggtc
     3721 gtgcgctggt ccgaggctga gtgtcaacgg cagcaactcc aggtgacacc agagaacaag
     3781 aggaaggtgc tgggcaaggc cctgggtctc atcagattcc ccctgatgac cattgaggag
     3841 tttgctgcag ccagcccttt gcccgcaggc ccggcacagt ctggcatcct ggtggaccgg
     3901 gaggtggtca gcctcttcct acattttact gtcaacccca agcctcgtgt tgagttcatc
     3961 gaccggcccc ggtgctgcct gcggggcaag gagtgtagca ttaaccggtt ccagcaagtg
     4021 gagagccgct ggggctacag cggcaccagt gaccgcatca ggttctcggt caacaagcgc
     4081 atcttcgtgg tgggctttgg gctctatgga tccatccacg ggccgactga ctaccaggtg
     4141 aacatccaga tcatccacac agacagcaac acagtccttg gccagaacga cacgggtttc
     4201 agctgcgacg ggtctgccag caccttccgt gttatgttca aggagcccgt ggaggtcctg
     4261 cccaatgtga actacaccgc ctgtgccacg ctgaagggcc cggactctca ctatggcacc
     4321 aaaggtcttc gcaaggtgac ccacgagtcc cccaccacgg gggctaagac ctgcttcacc
     4381 ttctgttacg cggctgggaa caataacggc acgtctgtgg aggatgggca gatccccgaa
     4441 atcatcttct acacctaggt catcaaccca ggtcaccccg gccagccaca ggcctgccac
     4501 cctcccacca cttcccacac catcacggaa ggggctgcct gtggccacag tgacaagtgg
     4561 gaccgcctga cccaaagcac tggggaggcg cttaggccat gggctgggcc cggtcggtcg
     4621 agacaatccc tcagtcatgg ggggcagagt gggcctgact tggatggaca gctgtcaggc
     4681 ccgagcgagc gttgtgggtc gcagtccctg aagctcaggg gcagcaggcc agctccgagc
     4741 cccggtgctg cccctcccgc tcggctcgct ctcctccgtt ctctgcaact gcacactgca
     4801 cactgcaatg cattcgagcc catgctcagc tggagcctgc gcatgtgcgc gggcctctcc
     4861 tccagccagc agtctgggtt catgttcctt tccgtctccg ctgctccctg ggagggtccc
     4921 aggtcctgct gcccccctga aaccctggcc tcccgggcat gtacacagag tctctaggag
     4981 gtctgcccca gggtggtaac atgtgcgcca tggttcctac ttctcatagc agcgccagtg
     5041 ccaggccagc actgcccacc taaggtggac gggcgcctta ctattgtgcc cgcagagctc
     5101 agccttgccc tgcagggtct gagcaggtca ggcccatcaa gatgcactgg gcacccaggt
     5161 ggcctgatgt ggcacccagg ggtacacaga acacccctgt acatatcacg gccctggccc
     5221 tctaggctac tacataccct gtccagtgct gtcccagaag gcgcagtctc cagtttgggg
     5281 ttccacttcc tcatgtatcc ataccagtga cctcctgccc aggacccatg cccatcccaa
     5341 agccatggga gctgtgccct ccactgtgtc cccaaatgat ttttttttta aaataaagga
     5401 aaacatctgt cttgaa
//
