LOCUS       XM_039080444            4380 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus BTB domain containing 2 (Btbd2),
            transcript variant X1, mRNA.
ACCESSION   XM_039080444
VERSION     XM_039080444.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080444.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4380
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4380
                     /gene="Btbd2"
                     /note="BTB domain containing 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 40
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 198
                     samples with support for all annotated introns"
                     /db_xref="GeneID:500793"
                     /db_xref="RGD:1566094"
     CDS             1878..3422
                     /gene="Btbd2"
                     /codon_start=1
                     /product="BTB/POZ domain-containing protein 2 isoform X1"
                     /protein_id="XP_038936372.1"
                     /db_xref="GeneID:500793"
                     /db_xref="RGD:1566094"
                     /translation="MAAGGSGRASCPPGVGPGAGGLGPSANAAAAPSNAAACASGPPP
                     PPSPPPGPGTDAQAVGEERDDAGPGALLREPVYNWQATKPTVQERFAFLFNNEVLCDV
                     HFLVGKGLSSQRVPAHRFVLAVGSAVFDAMFNGGMATTSTEIELPDVEPAAFLALLKF
                     LYSDEVQIGPETVMTTLYTAKKYAVPALEAHCVEFLKKHLRADNAFMLLTQARLFDEP
                     QLASLCLESIDKNTADAIAAEGFTDIDLDTLVAVLERDTLGIREVRLFNAVVRWSEAE
                     CQRQQLQVTPENKRKVLGKALGLIRFPLMTIEEFAAASPLPAGPAQSGILVDREVVSL
                     FLHFTVNPKPRVEFIDRPRCCLRGKECSINRFQQVESRWGYSGTSDRIRFSVNKRIFV
                     VGFGLYGSIHGPTDYQVNIQIIHTDSNTVLGQNDTGFSCDGSASTFRVMFKEPVEVLP
                     NVNYTACATLKGPDSHYGTKGLRKVTHESPTTGAKTCFTFCYAAGNNNGTSVEDGQIP
                     EIIFYT"
ORIGIN      
        1 tttgttttcc tgagacaggg tctcactgtg tagccctggc tgtcctgcaa ctcactctgt
       61 agacctggct ggcctcaaac tcagagatcc ccctgcctct gtctccgcag tactggaacc
      121 gcaagtatga cttgcattga attttgactg gatcagcacg ctcccactca caggctactt
      181 tccctgtccc tcagttttgc tttctggatt attgggcaga ccagctaact ggccctgggg
      241 tccagagttt ggggtctggg gaaggggaac tagaaaatgt aggagtcgga gttacaatct
      301 gaggagtgtt gcccacactt ggattctacc cgtgggctcc aggattcaca ttctgggtct
      361 gggtcctgga agctccaggc agagtgtgtt cagggctcca gactcctggt tccctcctat
      421 acctgcctct ccatgcagcc cctcaactca gttctcccag ctcccagaaa ccccccaccc
      481 ccaccccagt gtctcttagg ccttagtccc tctccccttc tagctcctgc cctctctctc
      541 ccatcagctc ctcaggtaag cagcacacca gctttttccc cctccttcct caggtctagc
      601 ctggtctcac cttctcgttg tacctcaccc cacttctttc cctcatcatc ctttctgggt
      661 tcccagtcgt ttgggttctt aacgttttac agcctgagcc tgagcgggga ttggctgggc
      721 tcaggggctc aggcctggac tctataaaca gaggtcctga gccctcatcg tcctcagttc
      781 ctcctgttcc tctgcctctc ctacccttcc cgcatccacc atcttcatag gcctacctct
      841 ccctcttctc ttcccttttc catccctagt cctccgtcat accaggaccc ttcctctcaa
      901 gtccagctct ctgctgtgcg gtcccctcct cctccctgcc ttctctcctt cagtcctccc
      961 accggttact tcctgctctc ccctccctcc tctgtccgcc cctctccacc tgtccactac
     1021 tcctaggccc ttccccttcc tcccttttct cttgactttc ctctggcttc tttcccgggt
     1081 tccacccctc ttcctgatcc ttcctctcac ctgtgctcgg ctccctcctc ccactcctcc
     1141 cccatctccc atttcttctc cccaggctcc actactctgg aagccctgcc cctcatcatg
     1201 ctagctctag ccctcctccc tctgctcccc actccctctt tccctcccct ccccctcctg
     1261 tcgttccgtg cttctctcct ctgtctgccc tttacctctc cttgcttccc ctggctctct
     1321 tcatcctccc cctcctgccc ttgctccaat tcagggaggg cctaggcctc catggccccg
     1381 actacctcct ctagctcctg tctctgtgcc tcgccgtcac cacatccttc tctttcctcc
     1441 catccaatcc ctcccgttgc cctcctctcg gtcccagtat ccatttctcc ctcccatttc
     1501 cctccttccc ttttctctct ccccccctct ttcttgtctc accaatcctg tgcctagccc
     1561 tgccacgccc atcctccctt ccttcctctt catgttcaca atcgcttctc cctcatcctc
     1621 tcctcctctc ccctccctcc ccatctctgc ttcctatcta tcatcttccc ctggttcctc
     1681 tgcacgcccc tccgccccct agccttgccc tttctccctc ccttctgtcc gcccagcgcc
     1741 tcctccctct ttgtctcctc ccctcgctcc gctcaggtcc tgtctctctt tagccccgcc
     1801 cctcccatcc tcctcttgga tgccccgccc ccgatgacca cgccttccgt ggccccgccc
     1861 cgcgcagcag cgacaagatg gcggccggcg gcagcgggcg cgcgtcttgc ccgccggggg
     1921 tcgggccggg cgcgggcggc ctggggccaa gcgccaacgc ggccgcggcc cccagcaacg
     1981 ccgccgcctg tgcctcgggg cctccgccgc ccccgtcccc gccgcctggg cccgggactg
     2041 acgcgcaggc cgtgggcgag gagcgcgacg acgcgggccc gggcgcgctg ctgcgcgagc
     2101 ccgtgtacaa ctggcaggcc accaagccca cggtgcagga gcgcttcgcc ttcctcttca
     2161 acaacgaggt gctgtgcgac gtgcacttcc tggtgggcaa ggggctcagc tcgcagcgcg
     2221 tccccgcgca caggtttgtg cttgctgtag gcagtgctgt gtttgacgcc atgttcaatg
     2281 gcgggatggc tactacttcc actgagatcg agctgcccga cgtggagcct gctgccttcc
     2341 tggcgctgct caagttcctg tactcagacg aagtgcagat cgggcccgag acagtgatga
     2401 ccacactgta cactgccaag aagtatgcgg tgcccgcgct cgaggctcac tgtgtggagt
     2461 tcctgaagaa gcacctgcgg gctgacaatg ccttcatgtt gctcacacag gcacggctct
     2521 ttgatgagcc acagctggcc agcctgtgcc tggagagcat agacaagaac acggctgacg
     2581 ccattgctgc cgagggcttc accgacattg acctggacac actggtggca gtgctggaac
     2641 gagataccct gggcattcgt gaggttcggc tcttcaatgc ggtcgtgcgc tggtccgagg
     2701 ctgagtgtca acggcagcaa ctccaggtga caccagagaa caagaggaag gtgctgggca
     2761 aggccctggg tctcatcaga ttccccctga tgaccattga ggagtttgct gcagccagcc
     2821 ctttgcccgc aggcccggca cagtctggca tcctggtgga ccgggaggtg gtcagcctct
     2881 tcctacattt tactgtcaac cccaagcctc gtgttgagtt catcgaccgg ccccggtgct
     2941 gcctgcgggg caaggagtgt agcattaacc ggttccagca agtggagagc cgctggggct
     3001 acagcggcac cagtgaccgc atcaggttct cggtcaacaa gcgcatcttc gtggtgggct
     3061 ttgggctcta tggatccatc cacgggccga ctgactacca ggtgaacatc cagatcatcc
     3121 acacagacag caacacagtc cttggccaga acgacacggg tttcagctgc gacgggtctg
     3181 ccagcacctt ccgtgttatg ttcaaggagc ccgtggaggt cctgcccaat gtgaactaca
     3241 ccgcctgtgc cacgctgaag ggcccggact ctcactatgg caccaaaggt cttcgcaagg
     3301 tgacccacga gtcccccacc acgggggcta agacctgctt caccttctgt tacgcggctg
     3361 ggaacaataa cggcacgtct gtggaggatg ggcagatccc cgaaatcatc ttctacacct
     3421 aggtcatcaa cccaggtcac cccggccagc cacaggcctg ccaccctccc accacttccc
     3481 acaccatcac ggaaggggct gcctgtggcc acagtgacaa gtgggaccgc ctgacccaaa
     3541 gcactgggga ggcgcttagg ccatgggctg ggcccggtcg gtcgagacaa tccctcagtc
     3601 atggggggca gagtgggcct gacttggatg gacagctgtc aggcccgagc gagcgttgtg
     3661 ggtcgcagtc cctgaagctc aggggcagca ggccagctcc gagccccggt gctgcccctc
     3721 ccgctcggct cgctctcctc cgttctctgc aactgcacac tgcacactgc aatgcattcg
     3781 agcccatgct cagctggagc ctgcgcatgt gcgcgggcct ctcctccagc cagcagtctg
     3841 ggttcatgtt cctttccgtc tccgctgctc cctgggaggg tcccaggtcc tgctgccccc
     3901 ctgaaaccct ggcctcccgg gcatgtacac agagtctcta ggaggtctgc cccagggtgg
     3961 taacatgtgc gccatggttc ctacttctca tagcagcgcc agtgccaggc cagcactgcc
     4021 cacctaaggt ggacgggcgc cttactattg tgcccgcaga gctcagcctt gccctgcagg
     4081 gtctgagcag gtcaggccca tcaagatgca ctgggcaccc aggtggcctg atgtggcacc
     4141 caggggtaca cagaacaccc ctgtacatat cacggccctg gccctctagg ctactacata
     4201 ccctgtccag tgctgtccca gaaggcgcag tctccagttt ggggttccac ttcctcatgt
     4261 atccatacca gtgacctcct gcccaggacc catgcccatc ccaaagccat gggagctgtg
     4321 ccctccactg tgtccccaaa tgattttttt tttaaaataa aggaaaacat ctgtcttgaa
//
