LOCUS       XM_002729202            2493 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus BTB domain containing 18 (Btbd18),
            transcript variant X1, mRNA.
ACCESSION   XM_002729202
VERSION     XM_002729202.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_002729202.6.
            
            On Jan 21, 2021 this sequence version replaced XM_002729202.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2493
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2493
                     /gene="Btbd18"
                     /note="BTB domain containing 18; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     Proteins, and 51% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:100363270"
                     /db_xref="RGD:2323370"
     CDS             265..2439
                     /gene="Btbd18"
                     /codon_start=1
                     /product="BTB/POZ domain-containing protein 18"
                     /protein_id="XP_002729248.1"
                     /db_xref="GeneID:100363270"
                     /db_xref="RGD:2323370"
                     /translation="MCSPASPKILYRNPRFLRVAFLQLHHQQQSGVFCDALLQAEGEA
                     VPAHCCILSACSPFFTERLERERPVQGRKVVLELGGLKIQTLRKLVDFLYTSEMEVSQ
                     EEAQDVLSAARQLRVSELETLQLEGGKLVKAPQGRRLNRECLQPPSAAPISARVVVPR
                     SRPRTPLPVTQTPSPLGAVKLKSLGEEEGAHKKSNLPNADNLSDTLLLKKKARVCLTQ
                     ERSSSPSSQREGPKENKSNPGSTALPSLYPSVDEQLLPRKIRLSRSKPSPHVYTSKPS
                     SMLSGPSSMPTAPGRRLWRQRTVSEATQGVDKQKPGEVSTLQSTPDPPDVGKTGGKKQ
                     PSPESRAPASNSVEEGQVGRVKLRKIVNGTCWEVVQEPPIRNTQDSPQILESSDADEP
                     PGTLLSSVNEQEIPARIQLCHDSPENSRLQDILLSASHSPDHPVVKSEFGSSPMLTGK
                     EPELNIDCREPYTFDTTLLSQPCEAEQYRITSAAATSELEEILDFMLCGSDVEPPVGS
                     LESPGAEGCRTPSYHLSETGKNWIEGEEWCLPDMELWPRDLTGLEKEPVGENKEPVEP
                     FSPLVMRSENTESIEPLSPLVMPSEVSREELSLRGSWTPDLEITSSQPLDGQGEKLIH
                     LDSSDPSQRSYSDLSPPCPNWADTGLEVSLGMDEVLCPVPKAVREVSANPELLDPFPG
                     SSEDEEIDVVDWTVEGKLGPTSVPSVWPDPSSESETEVDILT"
ORIGIN      
        1 ggctgttggc ctacctgtgc tgctttgcgc aacctttcga cttgagactg gacattagaa
       61 ggaaacaaag caagtggaca agaggaccat aggaaacaga ggacaacagg aacaaattca
      121 attgcaaaac aattccagtt ttgacgtgaa ctatttggac tcttcagtgc ttcctgacag
      181 aaaactgcat aactgtacca gaaaaaggca gctatacgga atctgaacca ggaaaaccta
      241 ggaggtttat taaccagata cagcatgtgc tctcctgcca gtcccaaaat cctgtacagg
      301 aatccccggt tcctccgggt agcttttctg cagcttcatc accagcagca gagtggtgtg
      361 ttttgtgatg cccttctgca ggcagagggt gaggctgtcc cagcccactg ctgcatcctg
      421 tctgcctgta gtcccttctt cacagaacgc ttggagcggg aaaggccagt tcaaggtcgg
      481 aaggtggtgc tggagctggg aggcctaaag atccagacac taaggaagct tgtggacttc
      541 ctgtatacgt cagagatgga agtatctcag gaagaagccc aggatgtgct gtctgctgcc
      601 cgtcagctcc gagtgtcaga gctggaaacc cttcagctag agggcgggaa gttagtaaag
      661 gctcctcagg gccgaagact taacagagag tgcttacaac caccaagtgc tgcaccaatc
      721 tctgccagag tagtggtacc caggagccgc cctcgaactc cactgcctgt cacccaaact
      781 ccaagtcctc ttggggcagt gaagttgaag tccttagggg aagaagaggg ggctcacaaa
      841 aagagcaacc taccaaatgc agataacttg tcagacactc ttctactcaa gaagaaagcc
      901 agagtttgcc tgactcaaga aagaagttca tctccatcaa gccagagaga agggcctaag
      961 gaaaacaaga gtaaccctgg ttccacagca ctccccagtt tgtacccttc tgtggatgag
     1021 caacttttgc ccagaaagat caggctgagc cgctcaaagc catcccccca tgtctataca
     1081 tctaagcctt ccagcatgtt aagtggtccc agctcaatgc ccacagcccc tggccggcgt
     1141 ctttggagac agagaactgt aagtgaagca acacagggtg tagataagca gaagccagga
     1201 gaagttagta ctctacagag cactccagac ccacctgatg tcgggaagac aggtgggaag
     1261 aagcagccaa gccctgaatc cagagcccct gcctccaatt ctgtagagga ggggcaggtt
     1321 ggaagagtaa aacttagaaa gattgtcaat ggtacctgct gggaggttgt acaggagcct
     1381 cccatcagaa acactcaaga tagcccccag atcctagaat cctcagatgc agatgagcct
     1441 ccgggaactc tgctgtcctc agttaatgag caggaaatac ctgctagaat acaactgtgt
     1501 catgactccc ctgagaactc tagacttcaa gacattctgc tctctgctag ccactcccca
     1561 gaccacccag tggtgaagtc agagtttggg tccagtccaa tgctgacagg gaaggaacct
     1621 gagttgaata ttgactgcag agagccctac acatttgaca caaccttgct tagccaacct
     1681 tgtgaggctg agcaatatcg aatcacaagt gctgcagcca ccagtgaact ggaagagatt
     1741 ttggacttta tgctatgtgg ctcagatgtt gaaccaccag taggatcttt ggagagtcct
     1801 ggggctgaag gctgcagaac cccaagttat cacctgtcag aaacaggaaa gaattggatt
     1861 gaaggggaag aatggtgttt gccagacatg gaactctggc ccagagacct cacaggattg
     1921 gaaaaagaac cagttggtga gaacaaagag ccagttgagc cctttagtcc ccttgtcatg
     1981 cgctctgaga acacagaatc aattgagccc ctcagccccc ttgtcatgcc ctctgaggtg
     2041 agtagagagg aactttctct aagaggctct tggactccag accttgaaat taccagctcc
     2101 cagccactgg atggtcaggg agaaaaactt atccaccttg actcctctga cccttcccag
     2161 aggtcttata gtgatctctc tcctccatgc ccaaactggg ccgacacagg gctggaagtg
     2221 tccctaggca tggatgaggt attgtgtcct gttcccaagg cagtcaggga agtgtctgcc
     2281 aaccctgaac tgctggaccc atttcctggc agttctgaag atgaagagat tgatgtggta
     2341 gactggacag tggaagggaa gctggggccc actagtgttc cctctgtctg gcctgatcct
     2401 tcctcagagt cagaaacaga ggtagatata ctaacatagt agaggtagga gggcaggtta
     2461 gagctcttag gagggtgaca actattcatg aac
//
