LOCUS       NM_001017464            1916 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus BTB domain containing 16 (Btbd16), mRNA.
ACCESSION   NM_001017464 XM_341941
VERSION     NM_001017464.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1916)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 1916)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC079317.1.
            
            On Aug 31, 2012 this sequence version replaced NM_001017464.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079317.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1916              BC079317.1         4-1919
FEATURES             Location/Qualifiers
     source          1..1916
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q37-q41"
     gene            1..1916
                     /gene="Btbd16"
                     /gene_synonym="RGD1311454"
                     /note="BTB domain containing 16"
                     /db_xref="GeneID:361658"
                     /db_xref="RGD:1311454"
     exon            1..202
                     /gene="Btbd16"
                     /gene_synonym="RGD1311454"
                     /inference="alignment:Splign:2.1.0"
     exon            203..260
                     /gene="Btbd16"
                     /gene_synonym="RGD1311454"
                     /inference="alignment:Splign:2.1.0"
     CDS             243..1763
                     /gene="Btbd16"
                     /gene_synonym="RGD1311454"
                     /note="BTB (POZ) domain containing 16"
                     /codon_start=1
                     /product="BTB/POZ domain-containing protein 16"
                     /protein_id="NP_001017464.1"
                     /db_xref="GeneID:361658"
                     /db_xref="RGD:1311454"
                     /translation="MKMLNSRKIRMERRIVGATNRWRFPQDHFCGDLLALSQMCNVLN
                     VDLDDALKNPDKLCISKFQKLFTESIMDSGTQSGEADVILDCLGFKWELHHPQIFQSE
                     TLAKLYLTALIQNTKSSQRDLEKILKVHSTERMKKRSPVKKIIISLRINDPAVTRVAF
                     ALALKNLYMNEVEMTVDNVLGVLASAHILQFNRLFRKCVSTMLNRLTPCTIKNFYLAG
                     CKYKEEQLTNACEKWLAMNLVPLVGTQIHLRHIPEPLLYKVLKSPRLFTFSEFHLLKT
                     LLMWVYLQMNGKVQTLPIHETMLAFFSSFPKKSCFLEQDPGHSWMPLFLCLRLHGITS
                     GKDLEEIKHINFFPESWLVRVTANHYHALESGGNMVHLKDLSTQAMRFGLLFRQEYTT
                     YSETISIYGYFFEIKGIKHDTTSYSFSMQRIRHTDLECPSSVCEHSTISLRSERLVKY
                     EIRAQTLVDGRWQEFGTNQIMQKFGFIKPGCKSHALKIQTVGIPIYASFAFIFPAS"
     exon            261..409
                     /gene="Btbd16"
                     /gene_synonym="RGD1311454"
                     /inference="alignment:Splign:2.1.0"
     exon            410..483
                     /gene="Btbd16"
                     /gene_synonym="RGD1311454"
                     /inference="alignment:Splign:2.1.0"
     exon            484..627
                     /gene="Btbd16"
                     /gene_synonym="RGD1311454"
                     /inference="alignment:Splign:2.1.0"
     exon            628..717
                     /gene="Btbd16"
                     /gene_synonym="RGD1311454"
                     /inference="alignment:Splign:2.1.0"
     exon            718..832
                     /gene="Btbd16"
                     /gene_synonym="RGD1311454"
                     /inference="alignment:Splign:2.1.0"
     exon            833..902
                     /gene="Btbd16"
                     /gene_synonym="RGD1311454"
                     /inference="alignment:Splign:2.1.0"
     exon            903..1033
                     /gene="Btbd16"
                     /gene_synonym="RGD1311454"
                     /inference="alignment:Splign:2.1.0"
     exon            1034..1153
                     /gene="Btbd16"
                     /gene_synonym="RGD1311454"
                     /inference="alignment:Splign:2.1.0"
     exon            1154..1245
                     /gene="Btbd16"
                     /gene_synonym="RGD1311454"
                     /inference="alignment:Splign:2.1.0"
     exon            1246..1328
                     /gene="Btbd16"
                     /gene_synonym="RGD1311454"
                     /inference="alignment:Splign:2.1.0"
     exon            1329..1406
                     /gene="Btbd16"
                     /gene_synonym="RGD1311454"
                     /inference="alignment:Splign:2.1.0"
     exon            1407..1505
                     /gene="Btbd16"
                     /gene_synonym="RGD1311454"
                     /inference="alignment:Splign:2.1.0"
     exon            1506..1694
                     /gene="Btbd16"
                     /gene_synonym="RGD1311454"
                     /inference="alignment:Splign:2.1.0"
     exon            1695..1846
                     /gene="Btbd16"
                     /gene_synonym="RGD1311454"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaggcaggct cccccagcaa agcatctcat cccataggag aaaggggtga gccccgggtg
       61 tcatgagagc cttcaagatt cgggctcaga aggcgccgag cctccagctc tcccttagct
      121 cagtggccag cgcaaccagc atttctctgc ttcactctcg tcctctgtga acggcccctg
      181 tgggcagcag gacttcagaa ctgtgctcat cgctgtcatc gctgtcatct gcactatcat
      241 tcatgaaaat gttgaattca cgcaagattc ggatggagcg ccggattgtt ggtgcgacca
      301 accgatggcg ttttccccaa gaccatttct gcggagacct cctggcactt tcccagatgt
      361 gcaatgtttt gaacgtagac cttgatgatg ctctgaagaa cccagacaaa ttatgtattt
      421 caaaattcca aaagcttttc accgagagta tcatggacag tggcacccaa agtggggaag
      481 cagacgtgat cctcgactgc cttggcttca agtgggaact ccaccaccct cagatttttc
      541 aatctgagac cttggccaag ctctacttga cagccttgat acagaataca aaaagctccc
      601 agagggatct ggaaaagatt ctgaaagtcc attcaactga gaggatgaag aaaaggtccc
      661 cagtaaagaa gatcatcatt tccttgagga tcaatgaccc agcagtcacc agagtcgcct
      721 tcgccctggc cctgaagaac ctctacatga acgaggtgga gatgaccgtg gacaatgtgc
      781 tgggcgtgct ggcttctgct cacatcctcc agttcaaccg actctttcga aagtgtgtca
      841 gcacgatgtt gaacagactc acgccttgca ctatcaagaa cttctacttg gccggctgca
      901 agtacaagga agagcagctc accaatgcct gtgagaagtg gctggcaatg aacttggtcc
      961 ccctagtggg gacacagatc cacctccgac acatccctga gcctctgctg tacaaggtgc
     1021 tgaagtctcc caggttattt accttcagcg agttccatct cctgaaaacc ttgctcatgt
     1081 gggtttacct gcagatgaac ggcaaggtgc agacactccc aatccacgag accatgctgg
     1141 cattttttag cagctttccc aagaaaagct gcttcctgga acaggaccca ggacacagtt
     1201 ggatgccgct cttcctttgc ctgcgtctgc acggcatcac cagtggcaag gatctggagg
     1261 agataaagca cattaatttc ttccccgagt cctggctggt ccgggttaca gccaaccatt
     1321 atcacgcact ggagagtgga ggcaacatgg tccacctgaa agatctttct acacaggcca
     1381 tgaggttcgg gctgctcttc aggcaggaat acaccactta ctcggaaacg atttctatat
     1441 acggatactt ctttgagata aagggaatca aacacgacac tacctcttac agtttttcta
     1501 tgcagagaat aagacataca gacttggagt gcccctcctc agtctgtgag cacagcacca
     1561 tcagcctgag gtcagagcgc ctggtgaagt acgagatccg agcccagacg ctggtggacg
     1621 gcaggtggca ggagttcggg acaaaccaga tcatgcagaa atttgggttt atcaagccag
     1681 gctgcaaaag tcacgccctg aaaatccaaa ccgtgggcat cccgatctac gccagctttg
     1741 cctttatctt cccagcatcg tgacagcttt cgtaggaatc taggtgatcc ctttccctga
     1801 ccgacctatc tccataagag gaataaagat gacattaaag aggggaaaaa aaaaaaaaaa
     1861 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//
