LOCUS       XM_039092482            1340 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus bone marrow stromal cell antigen 1
            (Bst1), transcript variant X2, mRNA.
ACCESSION   XM_039092482
VERSION     XM_039092482.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092482.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1340
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1340
                     /gene="Bst1"
                     /note="bone marrow stromal cell antigen 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 58 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:81506"
                     /db_xref="RGD:620344"
     CDS             36..902
                     /gene="Bst1"
                     /codon_start=1
                     /product="ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase
                     2 isoform X2"
                     /protein_id="XP_038948410.1"
                     /db_xref="GeneID:81506"
                     /db_xref="RGD:620344"
                     /translation="MAVQACALSLRLGLWMSLLLPVLPGAGARAAGARWSGEGTTPHL
                     QSIFLGRCAEYTTLLSLEPGNKNCTAIWEAFKVVLDKDPCSVLPSDYDLFINLSRHAI
                     PRDKSLFWENNHLLVMSYAENTRRLMPLCDVLYGKVGDFLSWCRQENASGLDYQSCPT
                     AEDCENNAVDAYWKSASMQYSRDSSGVINVMLNGSEPKGAYPTKGESCGEGSVKILED
                     RLEALGFQHSCINDYPPVKFLMCVDHSTHPDCAMNSASASMWRESPALHAIGDISLII
                     SLLVALASSSQA"
ORIGIN      
        1 caggaggtca ctggctaaag gaatcagttt ccctgatggc ggttcaagca tgcgcgttgt
       61 ctctacggct ggggctgtgg atgtccctct tgctgccggt actgccgggg gcgggggcga
      121 gagctgctgg agcgcggtgg agcggggagg gtaccacgcc tcacctccag agcatcttcc
      181 tgggccgctg tgcggagtac accacgctgc tgagccttga gccggggaac aaaaactgca
      241 cagccatctg ggaggccttc aaggtggtgc tggacaagga tccctgctct gtgctcccct
      301 cagactatga tctcttcatt aacctgtcca ggcacgccat tcctagggac aagtcactgt
      361 tctgggaaaa taaccaccta ctggttatga gctatgcaga gaacacccgc cgccttatgc
      421 ccctgtgtga cgttctgtat ggcaaggttg gagatttctt gagctggtgt cgacaggaaa
      481 atgcctctgg acttgattac cagtcctgcc ccacagcaga agactgtgaa aacaatgccg
      541 tggatgccta ttggaaaagt gcatccatgc agtattcaag agacagttca ggagtgatca
      601 acgtcatgct gaatggctcg gagccaaaag gagcctatcc cacgaaaggg gaatcctgcg
      661 gcgaaggcag tgttaagatc ctggaagaca gactggaggc cttggggttc cagcacagct
      721 gtatcaatga ctacccgccg gtgaagttct taatgtgtgt ggaccacagc actcaccccg
      781 actgtgccat gaactcagcc tcagcgtcta tgtggaggga gagcccagct cttcatgcaa
      841 taggagacat cagcctcatc atctctctct tagtggcttt ggcttcaagt tctcaagcat
      901 gactagaaaa tcaccacagc gttctaacag aagccagtct tgcggcttcc cttgagcagt
      961 ccactgttct gtgtaaactg agaaagccca ccgtctcaag acagttcctt ctaggaaaac
     1021 agtgtaccca ggcggtaatc caattatatt tgcattcgtg attcgagaaa cgaggcattt
     1081 atctagtcct gcttggcagg cagaagttgc tactggggag ttaaagctat tctttcttct
     1141 ttgataatga tacagagtac tgagccctgg agtgtggtat aatcttttat aattaagtgt
     1201 atttttgtaa gtatctgtat tttatatttt ctgtattttc ttgtgtttca aaagatacaa
     1261 tttatgcttg tcaagagttt ccattacatg taccgtatat aaaggtatac aaatacagat
     1321 attgtgcaaa gacgtatata
//
