LOCUS       NM_001400966            2576 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus break repair meiotic recombinase recruitment
            factor 1 (Brme1), mRNA.
ACCESSION   NM_001400966 XM_006255329
VERSION     NM_001400966.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2576)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2576)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000019.1.
            
            On Jan 31, 2022 this sequence version replaced XM_006255329.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.1973849.1,
                                           SRR26643295.57679.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-320               JAXUCZ010000019.1  40916187-40916506   c
            321-368             JAXUCZ010000019.1  40915692-40915739   c
            369-473             JAXUCZ010000019.1  40909495-40909599   c
            474-648             JAXUCZ010000019.1  40904855-40905029   c
            649-727             JAXUCZ010000019.1  40902300-40902378   c
            728-832             JAXUCZ010000019.1  40901216-40901320   c
            833-1978            JAXUCZ010000019.1  40898905-40900050   c
            1979-2076           JAXUCZ010000019.1  40896747-40896844   c
            2077-2169           JAXUCZ010000019.1  40895461-40895553   c
            2170-2576           JAXUCZ010000019.1  40894821-40895227   c
FEATURES             Location/Qualifiers
     source          1..2576
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q11"
     gene            1..2576
                     /gene="Brme1"
                     /gene_synonym="RGD1306072"
                     /note="break repair meiotic recombinase recruitment factor
                     1"
                     /db_xref="GeneID:304654"
                     /db_xref="RGD:1306072"
     exon            1..320
                     /gene="Brme1"
                     /gene_synonym="RGD1306072"
                     /inference="alignment:Splign:2.1.0"
     exon            321..368
                     /gene="Brme1"
                     /gene_synonym="RGD1306072"
                     /inference="alignment:Splign:2.1.0"
     CDS             341..2296
                     /gene="Brme1"
                     /gene_synonym="RGD1306072"
                     /note="uncharacterized protein C19orf57 homolog"
                     /codon_start=1
                     /product="break repair meiotic recombinase recruitment
                     factor 1"
                     /protein_id="NP_001387895.1"
                     /db_xref="GeneID:304654"
                     /db_xref="RGD:1306072"
                     /translation="MNKKRQRNSAPVPHKPEGVTDSCNLSAGDLEAEGSEVQDHPELH
                     RGSLHPSKPSKNPRLRDPRGSPQRSMTVHSHHSRESEDSSEPAPSVEPAGEEPQPAAS
                     SCPVEDTGAASDLPGSPKELVPLPPSQSSVGRFVPQFAKPRKTVTRKTKAWEEDPESC
                     TTSQETTPELGALEAASQPQRESLRFPLHDARRPEDQTQPDGTLSKERTSSLDTGSLE
                     NNGFEMATVQDSSSQGRTLSAAAAEGREADSSTPQEGGTQGGEAEAQHSGEPQEGEDI
                     LYTSALVPASDPTIPCLETWSVAQDLSVPTHILHSTAAAPSFGSPAGASLMDSVITEV
                     SLDLSVLQHSALEVGSLLGSPDGQIPDGGCSGTLAEETPAGSKETRWKEKSPGDETLA
                     NITETAVPVKQEPMVEAGDSSHIAQEMGPAVKTKDPGSDGQLPGDIGMLPLPAQPMDE
                     KVVELSGLTYDQDLEGLSLYPHTPSQLEHTCLASDPPQSSKACHSSPDIPVHPAGKQQ
                     PAPSLRDQAAWQESSAMELDFLPDSQIQDALDATNMEQGFPSGNMSDPGWPVPSSYAI
                     GGSPKAVAKPQPRPHVGTWAQEPYRMQDATDTVRGLVVELSSLNRLIMSTHRDLEAFK
                     RRKTKSLPYLTKGLGSLARGDQGWRDL"
     exon            369..473
                     /gene="Brme1"
                     /gene_synonym="RGD1306072"
                     /inference="alignment:Splign:2.1.0"
     exon            474..648
                     /gene="Brme1"
                     /gene_synonym="RGD1306072"
                     /inference="alignment:Splign:2.1.0"
     exon            649..727
                     /gene="Brme1"
                     /gene_synonym="RGD1306072"
                     /inference="alignment:Splign:2.1.0"
     exon            728..832
                     /gene="Brme1"
                     /gene_synonym="RGD1306072"
                     /inference="alignment:Splign:2.1.0"
     exon            833..1978
                     /gene="Brme1"
                     /gene_synonym="RGD1306072"
                     /inference="alignment:Splign:2.1.0"
     exon            1979..2076
                     /gene="Brme1"
                     /gene_synonym="RGD1306072"
                     /inference="alignment:Splign:2.1.0"
     exon            2077..2169
                     /gene="Brme1"
                     /gene_synonym="RGD1306072"
                     /inference="alignment:Splign:2.1.0"
     exon            2170..2576
                     /gene="Brme1"
                     /gene_synonym="RGD1306072"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aggtgtgagg gcgcggcaat gtgacgtcct gagggccgtg gctcagctgc tgcactctgt
       61 tctgtcaggc tttgtggtgg attgggtgtg agcgtacctg ctgtccctct gtggggcagg
      121 tctccaggaa cggagttcac agtgtcaggc ctcaggcctt tctgcctccc accgccagtt
      181 tgccacgcgg tcccgtgaca gcttatgtgg gtattttctc aaaacgtcac accagtgact
      241 taggggactt gttccctctc agattcaagt tgacctcgtc ccgaccaaag acagcaactt
      301 ccgttactgc tgtggcccag atttctcagg gaaagataaa atgaataaga agaggcagcg
      361 gaactcagct ccagtaccac ataaaccaga aggggtaacg gacagctgta acctcagcgc
      421 tggggacctg gaggcagaag gatcagaagt tcaagaccat cctgagctac ataggggcag
      481 cctccatccc tcaaagcctt ctaagaaccc acggctgaga gacccccgtg gaagccccca
      541 gaggtccatg acggtccatt cacaccactc cagagagtca gaagacagct cagaacctgc
      601 tccttctgta gagccagctg gggaggaacc acaaccggca gcttccagct gcccagtgga
      661 ggacacagga gctgcctctg acctcccagg atcaccaaaa gagctggtcc ccctgcctcc
      721 ttcccagagc tcagtgggga ggtttgtccc tcagtttgcc aaaccaagga agacagtaac
      781 tagaaaaacc aaggcatggg aagaggatcc agagagctgc accacaagcc aggaaacaac
      841 gccagagcta ggtgccctag aagcagccag ccaaccacag agagagtccc tgaggttccc
      901 tctccatgat gccagaagac cagaagacca gacacagcca gatggtaccc tctcaaagga
      961 gaggaccagc tcactagata ctggaagctt ggagaacaat ggttttgaga tggccacagt
     1021 tcaagacagt agtagccagg gaagaaccct gtcggctgct gctgctgaag gcagggaggc
     1081 agatagcagc accccacagg aaggaggtac ccaaggaggg gaagcagagg cccagcattc
     1141 tggggaaccc caggaaggag aagacatcct ctacacttca gcattagttc ctgcctcaga
     1201 tcctaccata ccatgcctag agacctggtc tgtggctcaa gacctctctg tccccacaca
     1261 cattcttcac agcacagctg cagcacccag cttcggtagc ccagcgggtg cctctcttat
     1321 ggacagcgtc attacagaag tgagcttaga tctctctgtg ctgcaacaca gtgcactaga
     1381 ggtgggcagc ctgctgggct ctccagatgg gcagatccct gatggaggct gcagtgggac
     1441 tcttgctgag gagaccccag caggcagcaa ggagaccaga tggaaagaga agtcccctgg
     1501 tgatgagacc ctggcaaaca tcactgagac tgcagtacct gtgaaacaag agcccatggt
     1561 ggaagctgga gattccagcc atatagccca ggaaatgggt cctgccgtca agaccaagga
     1621 ccctggctct gatggacagc tgccagggga tataggaatg ctgcctttac cagcacagcc
     1681 catggatgaa aaggtggtgg agttaagtgg cctaacttat gatcaagact tggagggcct
     1741 cagtctgtac cctcataccc cctctcagct agagcacact tgtctagcta gtgaccctcc
     1801 ccagagctcc aaggcctgtc acagcagccc agacattcct gtacacccag cagggaagca
     1861 gcagccagct cccagtctca gagaccaggc tgcatggcag gagtcctctg caatggaact
     1921 agacttcctg cctgacagcc agatacagga tgccctggat gccaccaaca tggagcaggg
     1981 ctttccttca gggaatatgt cagaccctgg ctggcctgtc cctagctcat atgccatcgg
     2041 aggatcccca aaggcggtgg ccaaacctca gcccagaccc catgtgggaa cctgggccca
     2101 ggagccctac aggatgcagg acgcaacaga cacggtgcga ggccttgtgg tagagctctc
     2161 cagtctcaat cgactgatta tgagcactca ccgggacctg gaagccttca agcgcaggaa
     2221 aaccaagtct ctgccttacc tgactaaggg gttagggagc cttgctagag gggatcaggg
     2281 ctggagggac ttgtaaactg ctgtagcctg tgggggtcag cctaccatag cttataggca
     2341 ggaggctgag ggtggctact cccatgggac agggtgcctg agctttagga agtcatctga
     2401 cagagcatgg ccctgcccca gatgctcatc caggtttgag cacccaggct cctgagctga
     2461 gctgcagttg tctttgtttc tggaggggag cgtgccctct gttctgtctg tccttccccc
     2521 atgctttctg tgagttttgg gaaggcaggg aataaatgat gcagttgtga gcctga
//
