LOCUS       NM_001029915            2456 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus biogenesis of ribosomes BRX1 (Brix1), mRNA.
ACCESSION   NM_001029915 XM_215504
VERSION     NM_001029915.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2456)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 2456)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC098005.1.
            
            On Jul 29, 2005 this sequence version replaced XM_215504.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC098005.1, DY319033.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2456
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q16"
     gene            1..2456
                     /gene="Brix1"
                     /gene_synonym="Bxdc2; RGD1308508"
                     /note="biogenesis of ribosomes BRX1"
                     /db_xref="GeneID:294799"
                     /db_xref="RGD:1308508"
     exon            1..160
                     /gene="Brix1"
                     /gene_synonym="Bxdc2; RGD1308508"
                     /inference="alignment:Splign:2.1.0"
     CDS             5..1063
                     /gene="Brix1"
                     /gene_synonym="Bxdc2; RGD1308508"
                     /note="brix domain-containing protein 2; brix domain
                     containing 2; ribosome biogenesis protein Brix; BRX1,
                     biogenesis of ribosomes"
                     /codon_start=1
                     /product="ribosome biogenesis protein BRX1 homolog"
                     /protein_id="NP_001025086.1"
                     /db_xref="GeneID:294799"
                     /db_xref="RGD:1308508"
                     /translation="MAATKRKRRGDLEVQAKKPKKNRKDAGQPAKQADVAKEAEEEKD
                     RIPGPVCKGKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVI
                     NEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKG
                     SRPLLSFDPAFDDLPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRN
                     FQIIEEDAALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVVRSITAAKY
                     REKQQVKDVQKSRKKEPKTILPHDPTADVFVTPAEEKPIEVQWVKPEPKVDLKARKRR
                     IYKRHRKLQQKMSRGGAK"
     exon            161..272
                     /gene="Brix1"
                     /gene_synonym="Bxdc2; RGD1308508"
                     /inference="alignment:Splign:2.1.0"
     exon            273..316
                     /gene="Brix1"
                     /gene_synonym="Bxdc2; RGD1308508"
                     /inference="alignment:Splign:2.1.0"
     exon            317..387
                     /gene="Brix1"
                     /gene_synonym="Bxdc2; RGD1308508"
                     /inference="alignment:Splign:2.1.0"
     exon            388..437
                     /gene="Brix1"
                     /gene_synonym="Bxdc2; RGD1308508"
                     /inference="alignment:Splign:2.1.0"
     exon            438..511
                     /gene="Brix1"
                     /gene_synonym="Bxdc2; RGD1308508"
                     /inference="alignment:Splign:2.1.0"
     exon            512..562
                     /gene="Brix1"
                     /gene_synonym="Bxdc2; RGD1308508"
                     /inference="alignment:Splign:2.1.0"
     exon            563..664
                     /gene="Brix1"
                     /gene_synonym="Bxdc2; RGD1308508"
                     /inference="alignment:Splign:2.1.0"
     exon            665..793
                     /gene="Brix1"
                     /gene_synonym="Bxdc2; RGD1308508"
                     /inference="alignment:Splign:2.1.0"
     exon            794..2432
                     /gene="Brix1"
                     /gene_synonym="Bxdc2; RGD1308508"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caggatggcg gcgactaaga gaaagcggcg tggggacctg gaggttcaag caaagaagcc
       61 aaaaaagaac cggaaagatg ccgggcagcc agctaagcag gccgatgtgg caaaagaggc
      121 ggaggaagaa aaagatcgta ttccaggtcc tgtttgcaag ggcaaatgga aaaataaaga
      181 gcggatcctc atcttttctt ccagaggaat aaatttcaga acaagacact tgatgcaaga
      241 cttgagaatg ttgatgcctc attctaaagc agatactaaa atggatcgta aagataagtt
      301 atttgtgata aatgaggtct gtgaaatgaa aaattgcaac aaatgcatct actttgaagc
      361 taagaaaaag caggatctct atatgtggct ttcaaattca cctcatgggc catctgccaa
      421 attcttggtt caaaatattc ataccctggc tgaactaaag atgactggga actgtttgaa
      481 aggttctcgg ccccttttat cttttgaccc tgcttttgat gacttgccac attatgcttt
      541 gttaaaagaa ttcttaattc agatctttag tacaccacgg taccatccca agagtcagcc
      601 gtttgtggac cacgtgttta cgttcaccat tctggataac cggatctggt ttcggaactt
      661 ccagattata gaagaagacg ctgctctagt ggaaattgga cctcgttttg tcttaaatct
      721 cataaagatt tttcagggaa gctttggagg accaacctta tatgaaaatc ctcattacca
      781 gtctccaaac atgcatcggc gcgtcgtaag gtccatcaca gctgccaagt acagagagaa
      841 acagcaagtc aaagatgttc agaaatcaag gaagaaagaa ccaaagacta ttcttccaca
      901 cgatcccact gcagatgtgt ttgttacacc agcagaggag aaaccaatag aagtacaatg
      961 ggtgaaacca gagccaaaag tggatctgaa agcgagaaag agaaggattt acaaaaggca
     1021 tcggaaactg cagcagaaga tgagcagagg gggtgccaaa tgaatccatg gataactatc
     1081 tcttttagtt actgtgtatt tatttcgtat tccatgtgta aatactttta gtatacagaa
     1141 ttagctgtct gattagggcg ctattttaaa aaattaaaaa tctttaagtc agtattggta
     1201 tttttctaaa taaagcatct tcagaactca ccagctactt tattcttttc agagcctcac
     1261 ttagtattga gtctttagca cacttaacag ttatcttgcc ttgtttgctt agaattatag
     1321 tttggttaag ctgaaattca aaagaactag ttgggtctgt aattacttac aaagatgtta
     1381 gagactggat gggagggtgg aggtcatttc actgagcttt ctctgctgag gtcactaatt
     1441 cacgaagcct taggaagcag acttctgatc gttataggat atttgattgc agtgaatccc
     1501 aaaattgtgg tgtttactgg aaaaccctgt ttttagttgt ggctcagcct tagcacacac
     1561 ctttaatccc cctgactgga atacagacca gagaacaaag aaaacaaaga acagagaaca
     1621 aagttctggg agcagcagag aaaaggaagt tgtactggga caattgtacg gagacatgtt
     1681 gaaagaacaa gccagaagat tagaacagat agtcagggtt aatttaaggc taagcacagc
     1741 aaagaggcca agagaaaaga ttgatcagct ttgagaagag tttgaggcag aacacctgag
     1801 ttgaattgag tcagctatct gagatcagaa agaactagaa ggggtgacag aactagaaag
     1861 ggtgagttta ttcggtgtct tgaggctgaa agcattctag gcctagattt gattgtacag
     1921 aggctagaag cttccaggac taggcctagg ctagtctgag gcagtaagcc tcggagacaa
     1981 caattacatc aggagaataa gttactttta cattttagta cctgtaccat ttaattctta
     2041 ggctttaaaa aacaactaat acctgtttgt aagcaacttt aattttagac aacttcagat
     2101 tctagatagc agtagcaata gggaaagcag caacctgatc caccagtggt gatggggctg
     2161 gctggctggt gagatgcatg gacatagatg ttttttatac atacatatat atgttaaatt
     2221 gtatcagatg gttttgtcac accttttcac ttaacatggt gtgtttcccc acacctgcag
     2281 catgtttact gactaaacat gtatgctttc tccattcaaa gatttctaaa tgtttctagt
     2341 gtttctagta tggtgcctgt ggtaaacatt tcggtacaga aatctctttg tacaacactt
     2401 gttaaataaa actggtcaaa ggtttttagt aaaaaaaaaa aaaaaaaaaa aaaaaa
//
