LOCUS       XM_006247063            5080 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus BRCA1 interacting helicase 1 (Brip1),
            mRNA.
ACCESSION   XM_006247063
VERSION     XM_006247063.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006247063.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006247063.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5080
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5080
                     /gene="Brip1"
                     /note="BRCA1 interacting helicase 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 30 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:360588"
                     /db_xref="RGD:1307659"
     CDS             1269..4769
                     /gene="Brip1"
                     /codon_start=1
                     /product="Fanconi anemia group J protein"
                     /protein_id="XP_006247125.1"
                     /db_xref="GeneID:360588"
                     /db_xref="RGD:1307659"
                     /translation="MSSVLSEYTIGGVKIHFPCRAYPAQLAMMNSIVRGLNSSQHCLL
                     ESPTGSGKSLALLCSALAWQQSLTGKPVDEGLNKKPEAPSSCSCSCHSKNFTYSDTNL
                     DTSPHFSSPSKPSSERNAVSSPCRDSPERNSLAAKLSAKKHASIHEDDDFQVEKKRIR
                     PLETTQQIRKRHCLEKDVHHLDARLASEKRVKPESPIRKTSSSFQNPDGLCSRCCCSA
                     NQGINKESANTVKKDNGDQSKRPKIYFGTRTHKQIAQITRELRKTAYSGVPMTILSSR
                     DHTCVHPEVVGNFNRNEKCMELLDGKHGKSCYFYHGVHRISNQQTLQFLHGISKAWDI
                     EELVSLGRKLKACPYYTARELIDSADIIFCPYNYLLDSQIRESMDIKLKEQVVILDEA
                     HNIEECARETASYSVTEVQLRFARDELDSLINSNIRKKSHEPLRDVCYNLINWLETNS
                     KNLVERDYESSCKIWSGNEMLLNLHRMGITAASFPVLQKHLSAVLQKEEKVTSTHGKE
                     EAIQIPIISASTQIMLKGLFMVLDYLFRKNSRFADDYKVAIQQTYSWTNQIAIFDKNA
                     LLPVPKNKKHSRQKIGVNVLNFWCLNPAVAFSDINDKVRTIVLTSGTLSPLKSFSSEL
                     GVTFNIQLEANHVISNSQVWVGTVGSGPKGRNLCATFQHTETFEFQDEVGMLLLSVCQ
                     TVSQGILCFLPSYKLLEKLRERWIFTGLWHSLESVKTVIAEPQGGEKTDFDELLQVYY
                     DAIKFKGEKDGALLIAVCRGKVSEGLDFSDDNARAVITIGIPFPNVKDLQVELKRQYN
                     DHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFNNNPDRYISG
                     LSKWVRQQIQHHSTFASALESLTEFSKRHQKVTNRSKKEEKCTKENGSTLDVACLEGS
                     TLTSVSEASHQTPENSLEEEAKVCVQEQRYPQMAAENPSGPSHGVSRRKESDPGLREK
                     SVQTMKTEKSEISRSSSPTFGKQTEPVNWPIFNSLKRHFNSKVKNRTPVLKSSKNHAS
                     ASSAFNKTALPLTGKCVSSSAPANTPLAPCPQSEVIIPSVKADTTPAKTHCKQNEKDP
                     SPDAELSPVTEEAKGSSSNPAVGTEVDDDSVCFTPELFDPVSTDEENSELVETDRSSN
                     NSDCLSAEELFETVTGFGQK"
ORIGIN      
        1 aactctagga atcgtagtta ctgatgattt gagccaccat atgggtgcta gatatggaac
       61 ctgggtccta tacaagagaa tcaagtgttc ttagccactg atccaccacc ctcttcagat
      121 actggagtct gcttttatag acccaatttc acagggtata ttttttcttg aaagcagctt
      181 ttttttttta ttgttttatt gactaatcta ttgaactgat aaatcagaac ccatacccct
      241 ttactaaaga ttataacttt tcagtgtgac aactgacact tgtcaattga ggaattcgct
      301 tttagataat gcttttagga taaattaagg acacttgact tactatgtca aaggtaattt
      361 gttttttatg attatagatc catcatttta ggaaactgca taaccgaaag cagggcaaac
      421 aaccagtctt gctctctaaa ctaactgaag aaaactaccc atggttttgc cttttggggt
      481 ttctattagt tgagtcaaga ttaggctaca aacaacaacg acaacaataa taaatatcta
      541 ttaaaacaat ctagcgacca aaaaattaat ttgtcaaggt cgtggttaaa cctcctataa
      601 ttgaggaaat tgtacttctt ggcaaggaat aaaatagtat gcaagttagg taaaccctag
      661 tgatctatgt gatcgggaga gattatacgc ctcagattct atccgagacc ttgaacatca
      721 cggaataatg ttcgaagtgc catgggacct actcacttat tctggcattg tagtgacaat
      781 tctggtgcag tttgcactct cttagtgtaa ccatgggaag ttttatttgc gtgataagac
      841 aacaggaaaa atgtttcctt ttcgtcataa gattgtcttc cagtcatagg gaactggctg
      901 tctaggttag atcatccgtt cccaaaagtg gtacaagact tttttccttt cctttaagca
      961 aatctgcgga atttgttcca gtctttctct ctgggggtga tcgccttccg gtgcggtcta
     1021 gtacattagg gttgatttta tttcgcaggc tcccattggg cggtacagta ttggcctcgt
     1081 tcgatggttg gctgtttacc ttttggcctg actgtgtgat tggctgactg agaaccgggg
     1141 cgggaggcgc gaattcgtct gtgtggcgct gcagagtccg gcgcggacag ggaggagtgg
     1201 cagtaccttg gcacctggca gcgcggtaac agtcgtgaag aagcacctaa agtacagaag
     1261 aaggcaggat gtcctcagtg ttgtctgagt acaccattgg tggggtgaag attcactttc
     1321 cctgtagagc ttatccagcg cagcttgcta tgatgaattc tattgtcaga gggctaaaca
     1381 gtagccaaca ttgtttgttg gagagtccca caggaagtgg aaaaagttta gccttacttt
     1441 gttctgcatt agcatggcaa cagtctctta ctgggaagcc agtggatgag ggcctgaata
     1501 aaaagcctga agcaccatct tcgtgttctt gttcatgcca ttcaaagaat tttacctaca
     1561 gtgacacaaa cctggacact tcacctcatt tcagtagtcc aagcaaacca tcttcggaaa
     1621 gaaatgcagt ctcatcgccc tgtcgagact ctcctgaaag aaatagtctg gctgcaaagt
     1681 tatctgccaa gaaacatgcg tccatacacg aggatgacga ttttcaggta gagaagaaaa
     1741 gaatccgacc cttagaaacg acacagcaga taagaaagcg tcactgtttg gaaaaggatg
     1801 tccaccattt agatgcacga ctagcttcgg aaaagagagt aaagcccgag tctccgatac
     1861 gaaagaccag ctcctctttc caaaatcctg atggcctttg ttccagatgc tgttgctctg
     1921 ctaaccaagg aattaacaaa gagtctgcaa acactgttaa gaaagataat ggggaccaat
     1981 ccaagagacc taaaatttac tttgggacac gaacacacaa gcagattgct cagattacta
     2041 gagagctccg taaaacagct tactcagggg tcccgatgac tattctttcc agtagggacc
     2101 atacctgtgt tcatcctgaa gtagttggaa acttcaacag aaacgaaaag tgcatggaat
     2161 tgctggatgg aaaacatggg aagtcctgct atttctatca tggcgttcac agaattagta
     2221 atcagcagac attgcagttt cttcacggca tatccaaagc ctgggacata gaagaacttg
     2281 tcagcctcgg gaggaaactg aaagcttgtc cctactatac agctcgagaa ctgatagaca
     2341 gtgccgacat aattttttgc ccctacaact acctcttaga ctcacaaata agggaaagta
     2401 tggatataaa gctgaaagaa caagttgtca ttttggatga agctcataac attgaagagt
     2461 gcgctcggga aacagcaagc tacagtgtaa cggaagttca gctccggttt gctcgggatg
     2521 agctagatag tttgatcaac agtaatataa ggaagaaaag ccacgagccc ctacgtgatg
     2581 tgtgctataa cctcatcaat tggttagaaa caaattctaa gaatcttgta gaaagggatt
     2641 atgagtcgtc ttgtaagata tggagtggaa atgagatgct cttaaactta cacaggatgg
     2701 gcatcaccgc tgcttctttc cccgtcttgc agaaacatct ctcagctgtt cttcaaaaag
     2761 aagaaaaagt cacatcaacc catggtaaag aggaggcaat acaaatacct attattagtg
     2821 catcaactca gatcatgctc aaaggactct tcatggtact tgactatctc ttcagaaaaa
     2881 atagcagatt tgcagatgat tataaagttg ctattcaaca gacttactcc tggacaaatc
     2941 aaattgctat ttttgataaa aatgcgctct tgcctgtacc aaaaaataag aaacattcac
     3001 gacagaaaat tggagttaat gtgctaaact tttggtgctt aaatccagct gtggcctttt
     3061 cagatattaa tgacaaagta cggaccattg ttctaacatc agggacgctg tcacccctga
     3121 aatccttttc atcggagctt ggtgttacat ttaacattca actggaggcc aaccatgtca
     3181 tcagtaactc acaggtttgg gttggtactg ttggctcagg ccctaagggt cggaacctct
     3241 gtgctacctt ccagcacact gaaacatttg agttccagga tgaagtggga atgcttctgt
     3301 tgtctgtgtg ccagactgtg agccaaggaa ttttgtgctt tttgccatct tacaagctat
     3361 tagagaaatt aagagaacgc tggattttca caggcttgtg gcatagtttg gagtcagtga
     3421 agacggtcat cgcagaaccc caaggaggag aaaaaactga ttttgatgaa ttgctacagg
     3481 tgtactatga tgctatcaag ttcaaaggag aaaaggatgg agcccttctc atagcagttt
     3541 gtcgtggcaa agtgagcgag ggtctggatt tctcagatga taatgcccgt gccgtcataa
     3601 ccataggaat tccttttcca aatgtgaagg atcttcaggt tgaactaaaa cgacagtaca
     3661 acgaccacca ctcaaaattg agaggtcttt tgcctggccg tcaatggtat gaaattcaag
     3721 catacagagc cttaaatcag gctctaggca gatgtattcg acacaaaaat gactggggag
     3781 ctcttattct agtggacgat cgcttcaata acaacccaga ccgctatata tcgggacttt
     3841 ctaaatgggt gaggcagcag atccagcacc actcaacctt tgcaagtgcc ctggagtccc
     3901 tgaccgagtt ctccaaaaga caccagaagg ttactaatag atccaaaaag gaggagaaat
     3961 gtacaaaaga aaatgggtcc actctggacg tggcctgttt ggagggtagc actcttacaa
     4021 gtgtgtcaga agcaagtcat cagacgccag aaaactctct ggaagaagaa gcaaaagtgt
     4081 gtgtccagga gcaacggtat ccccagatgg ctgctgaaaa cccctcagga ccaagtcatg
     4141 gcgtttccag aaggaaggaa agtgatccag gactaagaga aaaatctgtt cagacaatga
     4201 aaacagaaaa aagtgagatt tcccggtctt caagcccaac ttttggaaag caaacagagc
     4261 cagtcaactg gcctatcttt aattctctga aacggcattt caatagtaaa gtaaaaaatc
     4321 gcacacccgt gctcaagtca tcaaagaacc acgcctctgc ttcttccgcc ttcaataaaa
     4381 ctgccttgcc actcacaggt aagtgtgtgt cctcaagtgc accagcaaac acaccactag
     4441 caccttgccc tcagtcagaa gtcataattc catcagtgaa ggctgacact actcctgcta
     4501 agacccattg caaacagaat gagaaagacc cttccccgga tgctgagctg tccccagtaa
     4561 ctgaagaggc caagggttcc agttccaatc cagctgttgg aacagaagta gacgacgact
     4621 ctgtatgctt tacacctgaa ctctttgatc ctgtcagtac ggatgaagaa aacagtgaac
     4681 tagttgaaac tgatagatcc agtaataatt cagattgtct ttctgctgaa gagctttttg
     4741 aaactgtaac tggatttggg cagaaatgaa agtcgaaggt cgcatggaca catagttgaa
     4801 tggagtcaca ccaatgaaag agcaaagctg ataacttgta taagtgaatt agaggtgggg
     4861 aaactcaggc atagacacga gggcctatgc agtaagggag ggctccctgg tggtaggtaa
     4921 tgctgtcagg cttttgttaa gccttgttgt gtaaataata atttgtatac tgggtaaatg
     4981 ttataatttt aactttttag atatgttttt tcattttaat tcattatcag attttaagta
     5041 tgttgtgttc agaaatacaa gttttattct agaattctaa
//
