LOCUS       XM_039112105            1240 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus BRF1, RNA polymerase III transcription
            initiation factor subunit (Brf1), transcript variant X6, mRNA.
ACCESSION   XM_039112105
VERSION     XM_039112105.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039112105.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1240
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1240
                     /gene="Brf1"
                     /note="BRF1, RNA polymerase III transcription initiation
                     factor subunit; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 5 ESTs, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 176 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:299347"
                     /db_xref="RGD:1311158"
     CDS             54..1127
                     /gene="Brf1"
                     /codon_start=1
                     /product="transcription factor IIIB 90 kDa subunit isoform
                     X5"
                     /protein_id="XP_038968033.1"
                     /db_xref="GeneID:299347"
                     /db_xref="RGD:1311158"
                     /translation="MTGRVCRGCGGTDIELDAARGDAVCTGCGSVLEDNIIVSEVQFV
                     ENSGGGSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRAQTLQNGRRHIHHLGSQLQL
                     NQHCLDTAFNFFKMAVSKHLTRGRKMAHVIAACLYLVCRTEGTPHMLLDLSDLLQVNV
                     YVLGKTFLLLARELCINAPAIDPCLYIPRFAHLLEFGEKNHEVSMTALRLLQRMKRDW
                     MHTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQLT
                     IDEFMKIDLEEECDPPSYTAGQRKLRMKQLEQVLSKKLEEVEGEISTYQDAIEIELEN
                     SRPKAKGALANLSKDGGVRIVCP"
ORIGIN      
        1 cggagagcgg gttggtgagc ggcagggggc cggtggggcc ccgcggctcc aacatgacgg
       61 gccgcgtctg ccgcggttgc ggcggcacgg acatcgagtt ggatgcggcg cgcggcgacg
      121 cggtgtgcac gggctgcggt tcggtgctcg aggacaacat catcgtgtcc gaggtgcagt
      181 tcgtggagaa cagcggcggc ggctcgtcgg cagtcggcca gttcgtgtcg ctggacggtg
      241 cggggaaaac cccaacccta ggcggcggct ttcatgtgaa cttgggaaag gaatcaagag
      301 cacagaccct acagaatggg cggcgccaca tccaccacct ggggagccag ttgcaactga
      361 accagcactg cctggacaca gccttcaact tcttcaagat ggctgtaagc aagcatctta
      421 cccgaggacg gaaaatggcc catgtgattg ctgcctgcct ctacttggtt tgccgaacgg
      481 aaggcacacc tcacatgctc ctcgacctca gcgacctgct ccaggttaac gtgtatgtgc
      541 tgggaaagac cttcctgctc ttggcgaggg agctttgcat caacgcacca gctatagacc
      601 catgcttgta cattccacga tttgcgcatc tactggaatt tggggagaag aaccatgagg
      661 tatccatgac ggccctgagg cttctgcaga ggatgaaaag ggattggatg cacacaggcc
      721 ggcgcccctc tggcctctgt ggagcagcac ttctggttgc agccagaatg catgacttcc
      781 ggagaaccgt caaagaagtc atcagcgtgg tcaaagtatg tgagtccaca ttgcggaaga
      841 ggctcacaga atttgaagac actccaacca gtcagctcac tattgacgag tttatgaaga
      901 ttgacctgga ggaggagtgt gacccgccct catacaccgc tggacagagg aagctgcgca
      961 tgaagcagct ggaacaggtc ctgtccaaaa agctagaaga agttgaaggt gagatatcca
     1021 cttaccaaga tgccattgaa attgagctag aaaacagtcg gccaaaggct aaaggggctc
     1081 tcgccaactt gtcaaaggat ggtggtgtgc gaatcgtgtg tccctaggct ccggtgagga
     1141 cgccacatcc agcccgttct gtgaggaaga cactgaggat gaggagctcg aggctgctgc
     1201 cagccacatg aacaaggact tttaccgaga gctcctgggg
//
