LOCUS       XM_017594111            4858 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus BRF1, RNA polymerase III transcription
            initiation factor subunit (Brf1), transcript variant X5, mRNA.
ACCESSION   XM_017594111
VERSION     XM_017594111.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017594111.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017594111.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4858
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4858
                     /gene="Brf1"
                     /note="BRF1, RNA polymerase III transcription initiation
                     factor subunit; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 16 ESTs, 2 long SRA
                     reads, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 57 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:299347"
                     /db_xref="RGD:1311158"
     CDS             273..1691
                     /gene="Brf1"
                     /codon_start=1
                     /product="transcription factor IIIB 90 kDa subunit isoform
                     X4"
                     /protein_id="XP_017449600.1"
                     /db_xref="GeneID:299347"
                     /db_xref="RGD:1311158"
                     /translation="MTALRLLQRMKRDWMHTGRRPSGLCGAALLVAARMHDFRRTVKE
                     VISVVKVCESTLRKRLTEFEDTPTSQLTIDEFMKIDLEEECDPPSYTAGQRKLRMKQL
                     EQVLSKKLEEVEGEISTYQDAIEIELENSRPKAKGALANLSKDGSGEDATSSPFCEED
                     TEDEELEAAASHMNKDFYRELLGADGGSEAAEDADGGSRPLALESLLGPLPTAASLGI
                     SDSIRECISSPSGDPKDSSGDGELDLSGIDDLEIDRYILNESEARVKAELWMRENAEY
                     LREQKEKEARIAKEKELGIYKEHKPKKSCKRREPILASTAGEAIEKMLEQKKISSKIN
                     YSVLRDLNSKGGGSPPRDDSQPPEHTSTKKLSRRKRAATRNSADPGTSMGKRLRPLVS
                     AQPAKKAAVGEALLLNSPALGAEPVKPSAVLVESGPVSYHPEEDADEEDAEEEDGEPC
                     VSALQMMGGNDYGCDGDEDDGY"
ORIGIN      
        1 accactacaa cccttgcgac atcccttcta ggatggactt actgccacta cttacctcct
       61 gtagcagaga agagagctat ggcaggtggc ccaatctggg caggaggctt catggcagat
      121 aaggacttga ggttaacgtg tatgtgctgg gaaagacctt cctgctcttg gcgagggagc
      181 tttgcatcaa cgcaccagct atagacccat gcttgtacat tccacgattt gcgcatctac
      241 tggaatttgg ggagaagaac catgaggtat ccatgacggc cctgaggctt ctgcagagga
      301 tgaaaaggga ttggatgcac acaggccggc gcccctctgg cctctgtgga gcagcacttc
      361 tggttgcagc cagaatgcat gacttccgga gaaccgtcaa agaagtcatc agcgtggtca
      421 aagtatgtga gtccacattg cggaagaggc tcacagaatt tgaagacact ccaaccagtc
      481 agctcactat tgacgagttt atgaagattg acctggagga ggagtgtgac ccgccctcat
      541 acaccgctgg acagaggaag ctgcgcatga agcagctgga acaggtcctg tccaaaaagc
      601 tagaagaagt tgaaggtgag atatccactt accaagatgc cattgaaatt gagctagaaa
      661 acagtcggcc aaaggctaaa ggggctctcg ccaacttgtc aaaggatggc tccggtgagg
      721 acgccacatc cagcccgttc tgtgaggaag acactgagga tgaggagctc gaggctgctg
      781 ccagccacat gaacaaggac ttttaccgag agctcctggg ggctgatggc ggctcggagg
      841 cagcagaaga cgctgatggg ggcagcagac ccctcgccct ggagtccctg cttggtcccc
      901 tgcccacagc agccagcctg ggtatctcag actccatccg agagtgcatc tcctccccca
      961 gtggagaccc caaagactct tcaggggatg gggagctgga cctcagcggc atcgatgacc
     1021 ttgagattga cagatacatc ctgaacgagt cagaagcccg ggtaaaggct gagttgtgga
     1081 tgcgggagaa tgctgagtac ctgcgggaac agaaagagaa agaagcaaga atagcgaagg
     1141 agaaggagct tggcatctat aaggagcaca agcccaagaa gtcttgcaaa cgccgggagc
     1201 caatcctagc cagcacagcc ggggaggcca ttgagaagat gctggaacag aagaaaatct
     1261 ccagcaagat caactacagt gtgctgcggg accttaacag caagggtggg ggcagcccgc
     1321 ccagggacga ctcacagcct ccagagcaca ccagcaccaa gaagctgtca cggaggaaaa
     1381 gagcagctac caggaacagt gctgatcctg ggacaagcat ggggaagagg ttgaggcctt
     1441 tggtgtctgc tcagcccgct aagaaggcag ctgtgggaga ggccttgctc ttaaattccc
     1501 ctgccttggg agctgagcct gtcaagccat cggcagtctt ggtggagagt ggccctgtgt
     1561 cataccatcc tgaggaggat gcagatgagg aggacgccga ggaagaggat ggagagccct
     1621 gcgtcagtgc tctgcagatg atgggaggca atgattatgg ctgtgatggt gacgaggatg
     1681 atggctactg agtggaactc aagaccaggc agcatcccgg tgctggactc caagtgtatc
     1741 tgtttatagg tgtcagatgg gccttgggcc acggctcaca ggcatgattt ctgagactcg
     1801 accagtcaag cactgcccca cttatttgaa gctctcttcc catggccgca ctgtggacca
     1861 ttgtacttac tattgggaat catgttttga gcaatgcaag ggatattttt tgccctgcaa
     1921 gggaaacgag ctgtgtgtta tgtgtaatga aacatggtca gagagtagcc gggtctggaa
     1981 ccacgtcatg cctcacctac tagtcactgt ttaccaggga tcctcaggca gaccctgtgc
     2041 cctctagtca tagggagatt gaagcacaag agcctcagtg tagaagagcc ctgctctgaa
     2101 cctgctgttt gttctctgcc ctgtccttgc ctgagacgtg tcagtcattg ctctatacta
     2161 ggccaccaca gtctgcagtc tctgccttta acctcaacac cagcttcctg cgggcaggat
     2221 gctccccacc attccagtgt ccactccctg tcttggacca ccaggagcat cgtaggcctc
     2281 agcctcctgc ctaggactcg tccttgaggc acccagtagc ttgttagtca gatttatctg
     2341 cagcacccag aaagcgaaga ccagcagacc atgtgctcca tcacttaaaa tggacctttc
     2401 gtactcctga acagaaccct ctgcaaagaa gcctgcaagc tatctcctgg cctcttcatg
     2461 agagggccca cagagttccc tccgttcatt taactccagc ctccctggat gcaaccctgg
     2521 atgcagacta cttggctttc agatcaagag gtgggggcca ggcttggggt gatgagttgg
     2581 ggcagctaca gatgagggaa tgagtcggac aggtaggaag tgatttgatg aaagactgca
     2641 agatgctttg ggactctatg tcccaaaggg gagtgtggaa ccatggtcag agcatggaag
     2701 ggaaagtatt ttaggatgtt tttatacagc aagacttgcc tgtgtcgtgg agagagtaca
     2761 gagtgaaggg tgagaagagg aggactgtga cctgctccct agctgtgtgt cttgtctgcc
     2821 caggaggaga gcccagtgct gggaaatgag caggggccag gaaggctgga gtgctcctgt
     2881 gaggtaattg agttagttgc tcactaccgt ggatagcagg tagcggatag gaaagcagga
     2941 taggatggct gtagaaagct gaggtggagg gcggtggaca gtactgagtg aggatgatcc
     3001 ctagaagata gggaagtagc caagtcaggg tgaggggttg tcttgaaatg tgggtcacat
     3061 ggttggagac ccaggtgctg aggaggatgg tcccagtagg gggcagccgt gaagtgggca
     3121 agatgcttct gagctgagct cacagccttg tgtctgagct accagcagca ctagtgtgag
     3181 gctcaaagag gcactgggtc tgtatgaccc cgctgtgctt gtaattagtc cgtttctatg
     3241 cgcttttttc tgactgggat tatcacagca gaatctgcct gcctggggtc ttctcagagg
     3301 gtagagcagc agaaccagcc ctcaccacac tggaccttag gaaagggaag gaggggacga
     3361 gggagtccac tggatcctgc attttagact gagaccctgt gtggtatgca cacttgcatg
     3421 ctgagcagac aggatagcac acttcagtct cctctgcctt ctgtcttcct gccagggaga
     3481 gggaggtcca gggacactac atgcaggatg caccatccaa gtttcttgcc agccatctaa
     3541 actgaggaac ctaatactta gtggttgcca ccatcctctg caaactgggt gatcactggg
     3601 gaatacagta gcagtcagca aggttcctga taaacctaga catttgaggc ttggcagagt
     3661 gtgtgcctgg ctttagaggt aaccagggga tgctttcagg agctggacca cagaatgagg
     3721 ttatagccat gcaaggctgt caggcactgt ttccgcttta gctgttcctc ctgagcaatt
     3781 gtgcccattg agaagcttct ccagccaacc ctgggccccg gttttctgat tcaggtgctc
     3841 tctcctgcca tatactacgg gtgaagtaag cccttcccta tgcctagtta gactgcggag
     3901 accaaggttt ggccatgtcc ttcgctcagt acctgtcgag gacccagggg acggatacac
     3961 cttggcagtg ggagaggata catgggatgg gtatgggtcc agctgggtag atgtttgcct
     4021 gtttgaagta cctgtcacca cgtttagcta gatggcaggt accctacaag aaactccaga
     4081 gaccaaagaa gcagggcctc catgggtgtt aatgagggag tagagtagtg gggtatgtgc
     4141 atcttagaat acctgttaga cccagcgttt ctctctggcc tcccttctaa gaggtataga
     4201 acaggagtta agtaaagaac ggggattgga ggagactggt gggtaccccc tggaggttgc
     4261 ttctgcatga tggataacct gggttctgat tgctctcttc tcagcagaga gcagtagatc
     4321 tctgagtgct caggtgtgca cgccagacag ggtgccagcc tagaatgcag gatccaaggg
     4381 tttgagacag tagctggacc tgggtctagg gtggttttgt gggagtcctt ccagtctagg
     4441 gagccaagcc tgggccagcc cctggaaagc ctgacttcag tgaagagatg catcagctcc
     4501 tagaccccac tggattgctg cggtcagaac ttgctgcagg ctaccaccct gcaggcccgc
     4561 agcccctcca caatccttat aagctctggg cctaccccag catcttatct cagtcagtgt
     4621 agaggggagt ttctgacttc atttgcccaa gccttgaggt ggaacccaaa tcttgggcct
     4681 tttttgggca cagaggaagc tttatgattc ctggcaccaa acccctgcct ggctttcccc
     4741 agcccagcca gtttctgtgg ctgctggggt ggatggcacc aaggaagtct gtaccccatg
     4801 agtgagggtg gctgcaccgg agtgtggcgg catacatgca gtacaggtta gtgttgca
//
