LOCUS       XM_006248968            3398 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus BRCA1-associated ATM activator 1
            (Brat1), transcript variant X1, mRNA.
ACCESSION   XM_006248968
VERSION     XM_006248968.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006248968.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006248968.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3398
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3398
                     /gene="Brat1"
                     /note="BRCA1-associated ATM activator 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 15 ESTs, 2 long SRA reads, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 209 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:498150"
                     /db_xref="RGD:1565146"
     CDS             172..2622
                     /gene="Brat1"
                     /codon_start=1
                     /product="BRCA1-associated ATM activator 1 isoform X1"
                     /protein_id="XP_006249030.1"
                     /db_xref="GeneID:498150"
                     /db_xref="RGD:1565146"
                     /translation="MDAECSRLLPALCAVLADPRQLVADDTCLEKLLDWFKTVTEAEP
                     SLQLLQDHPCLMELLSHVLKPQDVSPRVLSFALRLVGVFAAQEDCFQYLQQGELLLGL
                     FGETGALSWAAWSIPSVRSGWIQGLCSLAHHPSALHFLADSGAVDTIFSLQGDPSLFV
                     ASAASQLLVHILALSMQGGAPGSPVPEAVAWPVCAQKIMNHVEESLHSKATPQVTQAL
                     NVLTTTFGRCHNPWTGVLWERLSPPVARLFERDPIPATHSLMDLLLSVARSPVLNFAA
                     CGLWEMLAQTLSRLSPTQAGPLALGTLKLQHCPQELRTQAFRVLLQPLACILKATTQA
                     PGPPGLLDGTAGSLLTVDALLSSKSACVGLLCQTLAHLEELQMLPQCPSPWPQVPLLQ
                     AAVTILRLSDGSADPSSSAGGRLCGALGGCVRVQRAALDFLGTLSLGTSPLELVLEVF
                     AVLLKTLESPESSPMVLKKAFQATLRWLQSPHKTPSGSDLSPDALLFLGELFPILQKR
                     LCSPCWEVRDSALEFLTHLIRDWGGQADFREALHSSEVPTLARQLLQDPESYVRASAV
                     GAAGQLSSQGLQATPANQQGLLMDLMHILSTDSEGFPRRAVLRVFTEWLRDGHADVVR
                     DTEWFVATVLQAVSRDLDWEVRVQGLELAQVFLIQAMGQPRLHCPYTVGLPGATSSRP
                     HLEFLQTLCRLPLFEFAFCALLDCDRPVAQKACDLLLFLRDKTVSCSNPQEAGDSPNS
                     ASVEAALQRWREGEQAQPLGDLEPEAMLAILRSLDLEGLQGRLAKSSDHVEKSPQSLL
                     QDMLATVGVLEENEADCY"
ORIGIN      
        1 ctcgcggtgc gtagtgcgaa ctctaaaaaa tggggcagga cctgaggagg gtggggcctc
       61 ggccagcgtg aagcggaatt tgcggaggcg agggcggggc ttgcctcaga caccggaacc
      121 acagcgggtg aagcgctcgg aggttgggat tctggaactg ctggcctgat catggacgca
      181 gaatgctcca ggctcctccc ggctctctgt gctgttttgg cagatcctag acagctggtg
      241 gcagatgaca cctgcttgga gaaactactg gactggttta aaacagtgac agaggcagag
      301 cccagcctcc aactactgca ggaccacccc tgcctaatgg agctcctgtc ccatgtgctg
      361 aagccacagg atgtgagccc tagggtcctc tcctttgctc tgcgcctcgt tggggtcttt
      421 gcggcccagg aggactgttt ccagtacctt cagcaggggg agttgttgct ggggctcttt
      481 ggggagacag gtgcccttag ctgggcagcc tggagcatcc ccagtgtgcg cagcggctgg
      541 atccagggcc tgtgctccct ggcacaccac cccagtgccc tgcacttcct ggctgacagt
      601 ggtgctgtgg acacgatctt ctccttgcaa ggagacccca gcctgtttgt agcctcagca
      661 gccagccagc tcctagtaca catcctggct ctgtcaatgc aaggcggagc tccagggtcc
      721 cccgtccctg aagccgttgc ctggcctgtc tgtgcccaga agatcatgaa ccatgtagaa
      781 gagtccttgc attccaaagc caccccacag gtcacacagg ccttgaatgt cctgacgacg
      841 accttcgggc gctgccacaa cccctggaca ggggtcctct gggagcggct aagtccccct
      901 gttgcccgcc tgtttgagag agaccccatt cctgccacac actcgctcat ggacctgctt
      961 ctcagtgtgg ccaggtctcc tgtgttgaac tttgcagcct gtggcctgtg ggagatgctg
     1021 gcccagactc tgagccgcct gagccccacc caagctgggc ctctagctct ggggaccctg
     1081 aaacttcagc attgtcccca ggaactgagg acccaggcct ttagagtcct ccttcagcca
     1141 ctggcctgca tcctgaaagc taccactcag gcccctggac ctccaggctt gctggacggg
     1201 actgcgggta gcttgctgac tgtggatgca ctcttatctt caaagtcggc ctgtgtgggg
     1261 ctcctctgcc agactctggc gcacctggag gagctgcaga tgctgcccca gtgcccctca
     1321 ccgtggccac aggtgcctct gctgcaagct gctgtgacga tattgcgtct ctctgacggc
     1381 tcggcggacc ccagttccag tgcaggaggc cgtctctgtg gggcgctggg tggctgtgtt
     1441 cgtgtccagc gagcagccct tgacttcttg gggacgctgt ctctggggac aagccccctg
     1501 gaattggtgc tggaggtatt tgctgtcctc ctgaagaccc tggagagccc agagtccagc
     1561 cccatggtcc taaagaaggc cttccaggcc acactcagat ggctccagag cccacacaag
     1621 acccccagcg gctctgatct cagccccgat gccttgctgt tcctcggaga gctattcccc
     1681 atactacaga agcgcctgtg cagcccgtgt tgggaggtga gggactcagc cctggagttc
     1741 ctgacgcatc tgatccggga ctggggaggg caggctgact tcagagaggc actgcattct
     1801 tcagaagtac ccacacttgc ccgccagctc ctccaagacc ctgagagtta tgtccgagca
     1861 agtgcagtgg gtgccgctgg gcagctctcc agccagggcc ttcaggccac tcccgccaac
     1921 cagcagggcc tactcatgga cctcatgcat atcctgtcca cggactcaga gggcttccct
     1981 cgaagagctg tgttacgggt ctttactgaa tggctgaggg atggccatgc tgatgtggtt
     2041 cgagacacag agtggttcgt ggccactgtt ctccaggcag tgagccggga tctggactgg
     2101 gaggtccgag tgcagggctt ggagctggca caggtattcc tcatccaggc aatggggcag
     2161 cctagactcc actgtcccta tacagtaggc ctgcctgggg ccacctcttc ccgcccacac
     2221 ctggaattct tgcagactct ctgccgtctg ccactctttg agtttgcctt ttgtgccttg
     2281 cttgactgtg accgcccggt ggcccaaaaa gcctgtgacc tgctcctctt cttgagggac
     2341 aagacagttt cctgcagtaa ccctcaggag gccggggaca gccccaactc agcctcagtg
     2401 gaggctgccc tgcagaggtg gcgggaaggt gagcaggctc agcccctagg ggacctggag
     2461 cctgaagcca tgctggccat cctcaggtcc ttagacctgg agggcctgca gggcaggctg
     2521 gccaagagca gtgaccatgt ggagaagagc ccacagtccc tgctgcagga catgctggcc
     2581 acggtgggcg tgttggagga gaatgaagct gactgctact aaggcatgtc cccatcctgt
     2641 ccctgtctcc acctgtgcca gcagaaggac tccagcccag gtcggccgct caagagaccc
     2701 tcggggagtg gatcacatgt cctacatttt aggccgggga tgataacaca cctgtggctg
     2761 cagagtttgg aaggccaagg gaggagaata cagagtccct ggccagtctg gactagatag
     2821 caaccctgtc tcaagaaaac ccaagaagtc aaatcaaaac aaaactcctc tgtgtgcgtg
     2881 tgtgcgtgtg tgtgtgtgtg tgcagaccag aggtcggcct ccagtgtctt cctcaggtgc
     2941 tgtccacctt gtttattgag aagaggtctc tcactgggac ttggtactcg caatcgagct
     3001 tgccagggag ctccagggat cctgtcacca cctccccagc actgggattg tggtactgca
     3061 tctccttgcc agggtctgca tgtgggtgct gggatttgaa ctcaggtcct catgcttgca
     3121 tggcaagcac tttacccact gaaccgtctc ctcaggcccc acagaatcct actttccatg
     3181 ttttattaaa gaagtggctt gtttgctgcg cagaacaggt agcattgaag tctataatcc
     3241 ttcaagttag ctgtgtatgt gtgttctgcc tatagccatt tagctctctc tgctccattg
     3301 accaaagttt aaagtcccat aatctgtaaa gaattcagat agattgaagt tcaaagtcac
     3361 agctgtgggt cctgtaaaat aaaatttttt ttaaaaaa
//
