LOCUS       NM_001107791            1669 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus BPI fold containing family B, member 6 (Bpifb6),
            mRNA.
ACCESSION   NM_001107791 XM_001063805 XM_230756
VERSION     NM_001107791.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1669)
  AUTHORS   Bingle,C.D., Seal,R.L. and Craven,C.J.
  TITLE     Systematic nomenclature for the PLUNC/PSP/BSP30/SMGB proteins as a
            subfamily of the BPI fold-containing superfamily
  JOURNAL   Biochem Soc Trans 39 (4), 977-983 (2011)
   PUBMED   21787333
REFERENCE   2  (bases 1 to 1669)
  AUTHORS   Bingle,C.D., LeClair,E.E., Havard,S., Bingle,L., Gillingham,P. and
            Craven,C.J.
  TITLE     Phylogenetic and evolutionary analysis of the PLUNC gene family
  JOURNAL   Protein Sci 13 (2), 422-430 (2004)
   PUBMED   14739326
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jan 5, 2023 this sequence version replaced NM_001107791.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582419.2120627.1,
                                           SRR22582416.1555513.1 [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-44                JAXUCZ010000003.1  162841644-162841687
            45-145              JAXUCZ010000003.1  162843178-162843278
            146-253             JAXUCZ010000003.1  162843907-162844014
            254-353             JAXUCZ010000003.1  162845721-162845820
            354-458             JAXUCZ010000003.1  162846714-162846818
            459-608             JAXUCZ010000003.1  162847228-162847377
            609-663             JAXUCZ010000003.1  162847532-162847586
            664-724             JAXUCZ010000003.1  162848032-162848092
            725-816             JAXUCZ010000003.1  162848713-162848804
            817-990             JAXUCZ010000003.1  162849474-162849647
            991-1041            JAXUCZ010000003.1  162850796-162850846
            1042-1215           JAXUCZ010000003.1  162851201-162851374
            1216-1283           JAXUCZ010000003.1  162851891-162851958
            1284-1329           JAXUCZ010000003.1  162853445-162853490
            1330-1393           JAXUCZ010000003.1  162854195-162854258
            1394-1470           JAXUCZ010000003.1  162854626-162854702
            1471-1669           JAXUCZ010000003.1  162855272-162855470
FEATURES             Location/Qualifiers
     source          1..1669
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q41"
     gene            1..1669
                     /gene="Bpifb6"
                     /gene_synonym="Bpil3; Lplunc6"
                     /note="BPI fold containing family B, member 6"
                     /db_xref="GeneID:311558"
                     /db_xref="RGD:1311602"
     exon            1..44
                     /gene="Bpifb6"
                     /gene_synonym="Bpil3; Lplunc6"
                     /inference="alignment:Splign:2.1.0"
     exon            45..145
                     /gene="Bpifb6"
                     /gene_synonym="Bpil3; Lplunc6"
                     /inference="alignment:Splign:2.1.0"
     exon            146..253
                     /gene="Bpifb6"
                     /gene_synonym="Bpil3; Lplunc6"
                     /inference="alignment:Splign:2.1.0"
     CDS             154..1503
                     /gene="Bpifb6"
                     /gene_synonym="Bpil3; Lplunc6"
                     /note="bactericidal/permeability-increasing protein-like
                     3"
                     /codon_start=1
                     /product="BPI fold-containing family B member 6 precursor"
                     /protein_id="NP_001101261.2"
                     /db_xref="GeneID:311558"
                     /db_xref="RGD:1311602"
                     /translation="MQWSLCLVLCGLLAGTQADPGALLRLGMDIMNHEVQTAMEESHI
                     LEKMAAEASNPQTGGKAIKGLSNMKVKDVLEPVITLNFVPGVGIFQCVSTGMTITGKS
                     FTGGNMEINVVLNITATDRILQDEETGTPVFRSEGCEVILVNVKTNLPNNKAINKFVD
                     STLRKVLPGLMCPAIDAVLVYVNKKWTNLTDPMPVDRMGTVKYALTSPPATTASHIQV
                     DFSPVVQLQEGQLIPLATNGSSPEFPEGSAKDSQLLLSDTFLTAELALLQKSLEVNLK
                     DKRVRKLSQTTRTLAGFIPQVAKSYHKPKPLLIKVKINKPPKVTMKAGKSLMHLHGSL
                     EMFAARRHGKHPKSLFRLETHIGLEIHYSVHENRLQMATSLDSLLSLSRESSSIGDFQ
                     ETALTGFITDYLQKAYIPVVNDVLHVGLPLPDLLAIDYNLSELDVVEDALVLSLKME"
     exon            254..353
                     /gene="Bpifb6"
                     /gene_synonym="Bpil3; Lplunc6"
                     /inference="alignment:Splign:2.1.0"
     exon            354..458
                     /gene="Bpifb6"
                     /gene_synonym="Bpil3; Lplunc6"
                     /inference="alignment:Splign:2.1.0"
     exon            459..608
                     /gene="Bpifb6"
                     /gene_synonym="Bpil3; Lplunc6"
                     /inference="alignment:Splign:2.1.0"
     exon            609..663
                     /gene="Bpifb6"
                     /gene_synonym="Bpil3; Lplunc6"
                     /inference="alignment:Splign:2.1.0"
     exon            664..724
                     /gene="Bpifb6"
                     /gene_synonym="Bpil3; Lplunc6"
                     /inference="alignment:Splign:2.1.0"
     exon            725..816
                     /gene="Bpifb6"
                     /gene_synonym="Bpil3; Lplunc6"
                     /inference="alignment:Splign:2.1.0"
     exon            817..990
                     /gene="Bpifb6"
                     /gene_synonym="Bpil3; Lplunc6"
                     /inference="alignment:Splign:2.1.0"
     exon            991..1041
                     /gene="Bpifb6"
                     /gene_synonym="Bpil3; Lplunc6"
                     /inference="alignment:Splign:2.1.0"
     exon            1042..1215
                     /gene="Bpifb6"
                     /gene_synonym="Bpil3; Lplunc6"
                     /inference="alignment:Splign:2.1.0"
     exon            1216..1283
                     /gene="Bpifb6"
                     /gene_synonym="Bpil3; Lplunc6"
                     /inference="alignment:Splign:2.1.0"
     exon            1284..1329
                     /gene="Bpifb6"
                     /gene_synonym="Bpil3; Lplunc6"
                     /inference="alignment:Splign:2.1.0"
     exon            1330..1393
                     /gene="Bpifb6"
                     /gene_synonym="Bpil3; Lplunc6"
                     /inference="alignment:Splign:2.1.0"
     exon            1394..1470
                     /gene="Bpifb6"
                     /gene_synonym="Bpil3; Lplunc6"
                     /inference="alignment:Splign:2.1.0"
     exon            1471..1669
                     /gene="Bpifb6"
                     /gene_synonym="Bpil3; Lplunc6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aagcaggggg cagtcagctg caggccttcc ccaagcttgg caaggcagac acaggccagc
       61 tgcgtggccc ctccttgatt cctttcagtc aaagctcaaa ccagaactac atatttggcc
      121 caggctggga gaacttcagg aattggtgga ggcatgcagt ggagcctgtg cctggtcctc
      181 tgtggcctgc tggctggcac tcaagctgac cctggggctc ttctgaggct gggcatggac
      241 atcatgaacc atgaggtcca gactgccatg gaggagagtc acatcctgga gaagatggcc
      301 gctgaggcta gcaatccaca gacaggggga aaagccatta aagggctcag caatatgaag
      361 gtaaaggatg tcttggaacc tgttatcaca ttgaactttg tgccgggagt gggcatcttt
      421 cagtgtgtgt ccacaggcat gaccatcact ggcaagagct tcacaggggg gaacatggag
      481 atcaatgtgg tcctcaacat cacagccacc gaccggattc tgcaagatga ggagacaggc
      541 acccctgtgt tcaggagtga gggctgtgag gtcatcctgg tcaatgtgaa aacgaatctg
      601 cctaacaaca aggccatcaa caagtttgtg gacagtaccc tgcgcaaagt cctccctggc
      661 ctgatgtgtc cagccattga tgctgtcctg gtgtatgtga acaagaaatg gaccaacttg
      721 actgacccca tgcctgtgga ccggatgggc actgtcaaat acgccctgac atccccacca
      781 gccaccacag ctagccacat ccaggtggac tttagtcctg tggtgcagct tcaggaaggc
      841 cagcttatcc cacttgccac taatgggtca tccccagagt tccccgaggg ctcagccaag
      901 gactcacaac tactgctctc agacaccttc ctcacagccg agctggccct tctgcagaag
      961 tccttggaag tgaacctcaa ggacaagagg gttaggaagc tgtcacaaac cactaggaca
     1021 ctggctggct tcatcccaca ggtggccaag tcataccaca aaccaaagcc tttgctcatc
     1081 aaggtcaaga taaacaaacc ccccaaggtt accatgaagg ccggaaagag cctgatgcac
     1141 cttcacggca gcttggagat gtttgcagcg cgtagacatg gcaagcaccc gaagtcactc
     1201 ttccgcctgg agactcacat tggactggaa atccactact cagtgcacga gaaccggctg
     1261 cagatggcca cctctctgga cagtttattg agcctgtccc gggaatcttc ttcaattggc
     1321 gatttccaag agacggcgtt aactggcttc atcactgatt atctccagaa ggcctacatc
     1381 cctgtggtga acgatgtact ccatgttggg cttccactcc cagaccttct ggctatcgat
     1441 tacaacctgt ctgagttgga cgtagtagag gatgccctgg tactgagctt gaagatggaa
     1501 tgaccttgca agacgctgcc aactgccctc actgccgtca ttctgaacct gcagaggagc
     1561 ccagatgtga gccagatggg cctggccctg ccaccaatgg ttacttcctg tgatcaggag
     1621 aaagtgcgag gtctggtagg cctcagcaat aaacaggagg aagaccctt
//
