LOCUS       XM_001074561            5214 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus BPI fold containing family B, member 5
            (Bpifb5), transcript variant X1, mRNA.
ACCESSION   XM_001074561
VERSION     XM_001074561.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_001074561.6.
            
            On Jan 21, 2021 this sequence version replaced XM_001074561.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5214
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5214
                     /gene="Bpifb5"
                     /note="BPI fold containing family B, member 5; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 Protein, and 88% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:690479"
                     /db_xref="RGD:1596031"
     CDS             3553..5097
                     /gene="Bpifb5"
                     /codon_start=1
                     /product="uncharacterized protein Bpifb5"
                     /protein_id="XP_001074561.2"
                     /db_xref="GeneID:690479"
                     /db_xref="RGD:1596031"
                     /translation="MALRVPGENVSSHFHAAGSEGRMLLLLCALLFCWGMLPQARGMT
                     HGPLFLRINKTQLETDISDLLLEYQVLKGVIRMTVTGSPSEGVSVLDRLPFVRKELVK
                     KKSGLDLSLVGDLLSGKTIPELKKLLETAGLVIEDAKGPEVTLEILSDSLLQITLRCK
                     LYLSLLESLWLEAIKNIRIGVRLEQIGNKTRVAFEDCHTPPGSLSIEILKRSDTLLPN
                     QLLELVADTLDGSLPFFLQKIVCPVTTNLINFLLEDMLHIILPPVISDPNDFQYYLTT
                     TEFTEGAILMRVELVTPCGPHQRPPRSEHVVLPPLPGLSQNSMADFAFWLEIYNDILA
                     CLYTSQEIFIEPQDSSEVGLWQLLSLRSSQSQPGAYNLTRGSLGLIISAPQPPTVHLD
                     GCRTTVTQQGLLTLQGTNNASSGAVAWQLLCKGVFSSGSQKQQLQVTPHGAVVTLGSY
                     PTIMEKQGEYLKALLLAVLKRWFLPHHNKWLREHSLPLANIKGISFSHAQMDFSEDYI
                     LLTVPE"
ORIGIN      
        1 aggatgtgga cagagacgtg agggtggggt tcagacacct ctgagccgac ctgaacaagt
       61 ctttgtcata tggagacggc atgaccacag aggactagta gctgtggttg ggatcacctc
      121 ccttgggtgg cttacagatc gggagacaca cactttgttg atcttgttgg tatggtgggt
      181 catatgcttt ctgagccctg ttctggtgac agacaaacag gatgcagctt ctcctaggtg
      241 ggctcctgtg cccttttcag tcaagtgggg agaatcatgg ttctcacgtg gcagagctgg
      301 ggggacaatc aaatgaggca ctcagccagt ggctctgtga cacctcaggg aacaccttat
      361 caccaagacc tttcctactc agacacatat gacagccact gtctccgtgg tttctctgaa
      421 gccccaaggt tctgggacaa gacaaaaggc atctattcgt taagcctggg ttgttcccca
      481 cccccagcca cagccttcag gaagacaggg gtagtgtctg gttaagggac agtactcagt
      541 gtcagaggac atttcttttt tttttttttt tttctttttt tcggagctgg ggaccgaacc
      601 cagggccttc cgcttgctag gcaagcgctc taccactgag ctaaatcccc aacccccaga
      661 ggacatttct gccatacctc tggtctgtag tgccacctgg tcaccataag gcactttgtt
      721 ccaccccatg tgatcaccag atttgaatgt tgaaacatga agactcccct aacatagcta
      781 tggccaaggc gcctcaggtc catcatcccc tggagcctcc gagggtggca gatgaagatc
      841 cttactccct gggccagggg cagctctggg tccaatctga cctctggccc ccaggcctcc
      901 cacaggaagg aacttgggca cccacagcag ctggtcgcat ccttgtcccc actgttgtgt
      961 gggccatctc ctagatccac tctgctcaaa tctaggtatc agcctcctgc tggtaccaag
     1021 accatttgtt tcatgtcgga tgtcggtaac actagaggga tcgtagagct cacccgccac
     1081 ctaccttccc cacagcctat gcaacactct cccctcaccc agcgcatgtc actgcctctt
     1141 ctttcagact ccttcctcat ccaccatcct ctgtgctctg ctttccctgt gaaagacaag
     1201 aaactgtttc tgcgctgacc tgcatttgac aggactctga cactgccatc cctgacccag
     1261 agacagggga ccctagaggc aggagttctc aaatcccaca ggcggggctc tgagcctctg
     1321 catccttcct caacagaaag ggtgaaaact cttcttaaat ctgagtctca gaaacagtag
     1381 agagagaatt ccaggttata ccttataaac tgcccctaag tgacacccat ctgtatgact
     1441 ctagctcctc agaaggctgc gacaggagga ttattagttg gagaccaacc taggctacat
     1501 cacaagaaca cgtttcaaaa caaggcttga gcctggagag agagatccat ggtgaggacc
     1561 actggctgcc ctcccagagg agctgggttc agttcccaga acccacatca tggctcacaa
     1621 ctggatctcc agtgccaggg gacctggtgc cttcttccgg cctagtgtgt gccaagcata
     1681 tgtattgtca tactgagata aatacaggca aaacacccac acattaaatt taaaaaacaa
     1741 acaaacaaac ttcacccttt gagatggaga ggtgggtcag agattaaaaa catccactgc
     1801 tctcacagag gacctagaac ctatatcaag cactcacacc catgtgtaac tacagttcca
     1861 gggactctgg cgccctctgg ctgccaaagc acatgctcac atacacataa atttaaaaaa
     1921 aaaaaatctt aaaatagaga acctagtctt ctctaacata tcccaccaaa tcctgtgaat
     1981 tttcgctgct gatttgttct gttggctgaa ggaagagacg cttctgaaca agccagggtc
     2041 agcctcacgc ttcctgtgta tctgctgcct cctggaactt cgtcttccac cagctcccaa
     2101 gcctgaacct ccaggttgaa aactggaact cctgaggaaa ggatggggaa ggaaggggag
     2161 agatggtgta atgatatcgt aatctcaaaa aaaaaaaaac aagtttaaaa cgagagataa
     2221 aaggaaattg gagctaacac ctgttctgct tgtactgagt tgtaaaggag aaaattcagc
     2281 tgaaaatgcc aagacaactg gagatagttg gtggtggtca caccacccgt aatgaaggag
     2341 ccacgctcac atggttgggt gcatgcagga gcatgggttg ctgggttcct gcaaggcagg
     2401 gcctccatac aggtaggtga cagagagctc agtcatggaa ctgctgtggc agaaccacca
     2461 aatctctggg ccctttctgg gccctaacat caaaccccat ctctctctgg catgctacct
     2521 gacctgatgg aggcactcac tcctgtctct cagttccctt gtgtaagaat tagaatgatc
     2581 ataacgggtc gttagccctt cctgtgcacc aggcctgcaa ctccacagtt gctgctatgc
     2641 tgaccgctga ccttcaccat ccccaaagcc atctgtagga ctatcgtctt ctgagtggag
     2701 cttagaagga aatgaacaca gttttttctc cattcctcag atcccacata gtcgaagcaa
     2761 ccatttagga cctgtctgca cctttggtga ccacatctgg gtagaaatga gataagagcc
     2821 tgggtgacat acagaggaag gacatgggaa gggcaggaac aaggtggaca ctgccagctt
     2881 catcttcgcc cctcacctgc tcacacatgt cacccacaca ctcacacaca tatgtacaca
     2941 cacacacaca cacacacaca cacacaccct taccaccttg ggatatatgc cagtcacatc
     3001 ttgcattagc agcctcctca caagagcggg agatacgcca aagggaaagg gcccaagccc
     3061 atcccacttc ctccttggag tccaatggcc acattctgag cttgctgtcc cctaccccgg
     3121 ccctgcatca gtgacaggct ctatcggttt tggccaaaag cccctggctg caaagtgcca
     3181 agagaagtga ttctttcgct gaagaattgg gcttgccaaa ccttgccagg ggccttgtct
     3241 tctcaccatg tacccgccct tcacttcaga gcctggtgta taaaagtagt cctttaagaa
     3301 acctggtgac acagtcctga aagatctaga aggctccatt cagagcggta aggacaaagg
     3361 agacagcacc cacatacaca gatgtttgct gtgcctccac cattacatgg ggaaatagag
     3421 caaaggttct tagcatctgg tcatcctggg ttcagatcca agctctgcca cttatgtttt
     3481 accgtaaggg tgtcaggccc agagcagggc tgttagaata taaaaagatg gggaccaggg
     3541 tagtgtgggg tcatggcact gcgggtccct ggagagaacg taagctctca cttccacgct
     3601 gcaggttctg aagggaggat gctgctgctg ctgtgtgcac tgctgttctg ctgggggatg
     3661 ctgccccaag cccgagggat gacccatggc cctctcttcc tgcggatcaa caagacccag
     3721 ctggaaacag acatctcaga tctactatta gagtaccagg tcctgaaggg tgtgatcagg
     3781 atgactgtga ctggatcccc aagtgagggt gtgtctgtcc tggaccgcct gccctttgtc
     3841 agaaaggagc ttgtcaagaa gaagagtggg ctggacctgt cactcgtagg ggacctgctg
     3901 tctgggaaga ctatccctga gctgaagaag ttgctggaga cagccgggtt ggtcatagaa
     3961 gatgccaagg gaccagaagt caccctggaa attctaagtg acagccttct gcagatcaca
     4021 ctgcgctgca aactgtacct ctcactcctg gagagcctat ggctggaagc catcaagaat
     4081 atacgcattg gagtacggct agaacagata gggaacaaga cccgagtagc cttcgaggat
     4141 tgccacacgc cacccggaag cctgagcatt gagatcttga aacgatcaga caccttgttg
     4201 ccaaaccaac tgctggaact ggtggcagac accctggatg gatccctgcc ctttttcctg
     4261 cagaagatag tgtgccctgt gaccacaaac ctgatcaact tcctgctgga agacatgcta
     4321 cacatcattc ttcctcctgt catctctgat cccaatgatt tccagtacta tttgaccacc
     4381 acagagttca cagaaggagc catcctgatg agagtggagc ttgtgactcc ctgtggccca
     4441 caccagaggc cccccaggtc agagcacgtg gttctcccac ctctcccagg attatcccag
     4501 aacagcatgg cagactttgc cttttggcta gaaatctaca atgacatcct ggcctgcctc
     4561 tacaccagtc aggagatctt catagagccc caggattcct cggaagttgg cctgtggcaa
     4621 ctgctgtccc tgagaagctc acagtcccag ccaggggctt ataatctgac cagagggagc
     4681 ctgggcctga tcattagcgc cccacaaccc cctactgtcc accttgatgg ctgcaggacc
     4741 accgtcaccc agcagggctt actgacgctg caggggacca acaatgcctc ctctggggca
     4801 gttgcctggc aactcctctg caaaggcgtg ttctcctcag ggagtcagaa acagcaactc
     4861 caggtcacac cacatggagc tgtggtcact ttgggctcct accctaccat catggagaag
     4921 cagggagagt acctgaaggc cttgctgttg gctgtcctga agaggtggtt cctgcctcat
     4981 cacaacaagt ggctccgtga gcacagcctc ccactggcca acatcaaagg catctccttc
     5041 agccatgccc aaatggactt ctctgaggat tacatcctgc tgaccgtccc ggagtaacca
     5101 ttctgctggg gctctatccc tgcccacagc tgcacacact caagagcccg aagtccagga
     5161 tcagcgtcag tcccagtgca gttcacggct gtaataaaga tgtttcctct gtga
//
