LOCUS       NM_001109209            2100 bp    mRNA    linear   ROD 02-APR-2024
DEFINITION  Rattus norvegicus BPI fold containing family B, member 4 (Bpifb4),
            mRNA.
ACCESSION   NM_001109209 XM_001063904 XM_575269
VERSION     NM_001109209.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2100)
  AUTHORS   Bingle,C.D., Seal,R.L. and Craven,C.J.
  TITLE     Systematic nomenclature for the PLUNC/PSP/BSP30/SMGB proteins as a
            subfamily of the BPI fold-containing superfamily
  JOURNAL   Biochem Soc Trans 39 (4), 977-983 (2011)
   PUBMED   21787333
REFERENCE   2  (bases 1 to 2100)
  AUTHORS   Bingle,C.D., LeClair,E.E., Havard,S., Bingle,L., Gillingham,P. and
            Craven,C.J.
  TITLE     Phylogenetic and evolutionary analysis of the PLUNC gene family
  JOURNAL   Protein Sci 13 (2), 422-430 (2004)
   PUBMED   14739326
REFERENCE   3  (bases 1 to 2100)
  AUTHORS   Dear,T.N., Boehm,T., Keverne,E.B. and Rabbitts,T.H.
  TITLE     Novel genes for potential ligand-binding proteins in subregions of
            the olfactory mucosa
  JOURNAL   EMBO J 10 (10), 2813-2819 (1991)
   PUBMED   1915264
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On or before Sep 9, 2010 this sequence version replaced
            XM_575269.3, XM_001063904.2, NM_001109209.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.1590438.1,
                                           SRR22582424.1709440.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-106               JAXUCZ010000003.1  162883736-162883841
            107-169             JAXUCZ010000003.1  162884712-162884774
            170-683             JAXUCZ010000003.1  162885486-162885999
            684-788             JAXUCZ010000003.1  162886898-162887002
            789-932             JAXUCZ010000003.1  162887594-162887737
            933-996             JAXUCZ010000003.1  162890009-162890072
            997-1057            JAXUCZ010000003.1  162890419-162890479
            1058-1149           JAXUCZ010000003.1  162891384-162891475
            1150-1353           JAXUCZ010000003.1  162892981-162893184
            1354-1407           JAXUCZ010000003.1  162894140-162894193
            1408-1578           JAXUCZ010000003.1  162896449-162896619
            1579-1646           JAXUCZ010000003.1  162899464-162899531
            1647-1689           JAXUCZ010000003.1  162901198-162901240
            1690-1753           JAXUCZ010000003.1  162903156-162903219
            1754-1830           JAXUCZ010000003.1  162904952-162905028
            1831-2100           JAXUCZ010000003.1  162907938-162908207
FEATURES             Location/Qualifiers
     source          1..2100
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q41"
     gene            1..2100
                     /gene="Bpifb4"
                     /gene_synonym="Lplunc4; RY2G5"
                     /note="BPI fold containing family B, member 4"
                     /db_xref="GeneID:499925"
                     /db_xref="RGD:1561174"
     CDS             1..1854
                     /gene="Bpifb4"
                     /gene_synonym="Lplunc4; RY2G5"
                     /note="long palate, lung and nasal epithelium
                     carcinoma-associated protein 4; ligand-binding protein
                     RY2G5; potential ligand-binding protein"
                     /codon_start=1
                     /product="BPI fold-containing family B member 4 precursor"
                     /protein_id="NP_001102679.2"
                     /db_xref="GeneID:499925"
                     /db_xref="RGD:1561174"
                     /translation="MWTAWCVAALSVAAVCGIRQDTTTVLRVTKDVLGDAISGTIQKS
                     DAFRSALREVPVGVGGVPYNDFHVREPPPKYTNGRQLGGNYKYGHIEANDNTAQLGGK
                     YRYGEILDSDGSLRDLRHEDYRPSDSAYHRGPGRYRSAADPSSAGRLHRRELRPGEIP
                     AGVATGALGPGGLLGTGGILANEGILAGQGGLLGGGGLLGDGGLLGGGGVLGVLGEGG
                     ILSTVQGITGLRIVELTLPRVSVRLLPGVGVYLSLYTRVAINGKSLIGFLDIAVEVNI
                     TAKVRLTMDRTGYPRLVIERCDTLLGGIKVKLLRGLLPNLVDNLVNRVLANVLPDLLC
                     PIVDVVLGLVNDQLGLVDSLVPLGILGSVQYTFSSLPLVTGEFLELDLNTLVGEAGGD
                     LIDYPLGRPAMLPRPQMPELPPMGDNTNSQLAISANFLSSVLTMLQKQGALDIDITDG
                     MFEDLPPLTTSTLGALIPKVFQQYPESRPLTIRIQVPNPPTVTLQKDKALVKVFATSE
                     VVVSQPNDVETTICLIDVDTDLLASFSVEGDKLMIDAKLDKTSLNLRTSNVGNFDVFI
                     LEMLVEKIFDLAFMPAMNAILGSGVPLPKILNIDFSNADIDVLEDLLVLST"
     exon            1..106
                     /gene="Bpifb4"
                     /gene_synonym="Lplunc4; RY2G5"
                     /inference="alignment:Splign:2.1.0"
     exon            107..169
                     /gene="Bpifb4"
                     /gene_synonym="Lplunc4; RY2G5"
                     /inference="alignment:Splign:2.1.0"
     exon            170..683
                     /gene="Bpifb4"
                     /gene_synonym="Lplunc4; RY2G5"
                     /inference="alignment:Splign:2.1.0"
     exon            684..788
                     /gene="Bpifb4"
                     /gene_synonym="Lplunc4; RY2G5"
                     /inference="alignment:Splign:2.1.0"
     exon            789..932
                     /gene="Bpifb4"
                     /gene_synonym="Lplunc4; RY2G5"
                     /inference="alignment:Splign:2.1.0"
     exon            933..996
                     /gene="Bpifb4"
                     /gene_synonym="Lplunc4; RY2G5"
                     /inference="alignment:Splign:2.1.0"
     exon            997..1057
                     /gene="Bpifb4"
                     /gene_synonym="Lplunc4; RY2G5"
                     /inference="alignment:Splign:2.1.0"
     exon            1058..1149
                     /gene="Bpifb4"
                     /gene_synonym="Lplunc4; RY2G5"
                     /inference="alignment:Splign:2.1.0"
     exon            1150..1353
                     /gene="Bpifb4"
                     /gene_synonym="Lplunc4; RY2G5"
                     /inference="alignment:Splign:2.1.0"
     exon            1354..1407
                     /gene="Bpifb4"
                     /gene_synonym="Lplunc4; RY2G5"
                     /inference="alignment:Splign:2.1.0"
     exon            1408..1578
                     /gene="Bpifb4"
                     /gene_synonym="Lplunc4; RY2G5"
                     /inference="alignment:Splign:2.1.0"
     exon            1579..1646
                     /gene="Bpifb4"
                     /gene_synonym="Lplunc4; RY2G5"
                     /inference="alignment:Splign:2.1.0"
     exon            1647..1689
                     /gene="Bpifb4"
                     /gene_synonym="Lplunc4; RY2G5"
                     /inference="alignment:Splign:2.1.0"
     exon            1690..1753
                     /gene="Bpifb4"
                     /gene_synonym="Lplunc4; RY2G5"
                     /inference="alignment:Splign:2.1.0"
     exon            1754..1830
                     /gene="Bpifb4"
                     /gene_synonym="Lplunc4; RY2G5"
                     /inference="alignment:Splign:2.1.0"
     exon            1831..2100
                     /gene="Bpifb4"
                     /gene_synonym="Lplunc4; RY2G5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgtggactg cttggtgtgt ggcagctctg tcagtggcag ctgtgtgtgg catccgtcaa
       61 gacacaacca cagtcctccg agttacaaaa gatgtgctgg gcgatgccat ctcaggcaca
      121 attcagaaga gtgacgcctt ccgctccgcc ctgagggagg tgcccgtggg tgtcggtggt
      181 gtcccctaca acgacttcca tgtccgagag cctcccccca aatacaccaa tggcagacag
      241 cttggtggca attacaaata cggtcacatt gaggcgaatg acaacacagc tcagctgggg
      301 ggcaaatacc gctatgggga gatcctggac tctgatggga gcctcaggga cctgcggcac
      361 gaagactacc gtccttcaga ctctgcctac caccgcggcc ccgggaggta caggtctgca
      421 gcggacccgt cctcggcggg caggctccac cggcgcgaac tgaggcctgg agagatccca
      481 gctggtgtgg ccactggagc actgggcccc ggaggcctgc tgggcactgg gggcatactt
      541 gcaaacgaag gcattctggc aggccaaggg ggcttgcttg gaggaggcgg tcttcttgga
      601 gatggaggac ttctcggagg aggtggtgtg ctcggtgtgc tgggtgaagg aggtatcctg
      661 agcaccgtcc aaggcatcac tgggttgcgc atcgtggaac ttacccttcc ccgggtgtct
      721 gtgagactcc tgcccggtgt gggtgtctat ctgagcttgt acactcgtgt ggccatcaat
      781 ggaaagagcc tcattggctt cctggatatt gcagtggagg ttaacatcac cgccaaagtt
      841 cggctgacca tggaccgcac aggctacccg cggctggtca ttgagcgctg tgacaccctc
      901 ctgggaggca tcaaagtcaa gctgcttcgg gggcttctcc ccaacctggt ggataactta
      961 gtgaaccgag tgctggccaa cgtactccct gacctgctct gtcccattgt ggatgtggtt
     1021 ttgggtcttg tcaatgacca gctgggtctc gtggactctt tggtgcctct cggaatactt
     1081 gggagtgtgc aatacacttt ctccagcctc ccactggtga ccggggagtt ccttgagttg
     1141 gaccttaata ctctagttgg ggaggcagga ggtgacctca ttgactaccc cctgggccgg
     1201 ccagctatgt tgcccaggcc acagatgcca gaactacccc ccatgggcga caacaccaac
     1261 tcccagctgg ccatctcggc caatttcctg agctcggtgc tgaccatgct gcagaagcaa
     1321 ggtgcattgg acatagacat cactgatggc atgtttgaag atctccctcc acttaccact
     1381 tccacattgg gggccttgat tcccaaggtg ttccagcaat accctgagtc ccgcccactc
     1441 accatcagga tccaggtgcc caacccccca actgtgaccc tgcagaagga caaggcactg
     1501 gtgaaggtgt ttgccacctc tgaagttgtc gtctcccagc ctaatgatgt ggagaccacc
     1561 atctgcctca tcgatgtgga cacagacctc ttggcttcat tttctgtgga aggggataag
     1621 ctcatgatcg atgccaagct ggataagacc agcctcaacc tcagaacctc aaacgtgggc
     1681 aactttgatg tgttcatctt ggaaatgttg gttgagaaga tctttgacct agcgtttatg
     1741 cccgcaatga atgctatact gggttctgga gtccctctgc ccaaaatcct caacattgac
     1801 ttcagcaacg ccgacatcga cgtgttggag gaccttctgg tgctgagcac atgagtgaca
     1861 gaggtagaca acgtgagaag aagtcaacca gcttcaggga ggattgtcct ggacaccggc
     1921 ctggtcccaa gtctcttcag ccttcaccac aggtcccctc ccaccctccc accctttcct
     1981 cctcctgccc tcagcctggg aaaggatcca gccactcccc attggccaac aatgccatgc
     2041 tcaggacagc ctggggactg agatcttgtg ctttcaataa aacatttcac tttccctgca
//
