LOCUS       NM_001077680            1639 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Rattus norvegicus BPI fold containing family B, member 1 (Bpifb1),
            mRNA.
ACCESSION   NM_001077680 XM_001064430 XM_575270
VERSION     NM_001077680.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1639)
  AUTHORS   Shin,O.S., Uddin,T., Citorik,R., Wang,J.P., Della Pelle,P.,
            Kradin,R.L., Bingle,C.D., Bingle,L., Camilli,A., Bhuiyan,T.R.,
            Shirin,T., Ryan,E.T., Calderwood,S.B., Finberg,R.W., Qadri,F.,
            Larocque,R.C. and Harris,J.B.
  TITLE     LPLUNC1 modulates innate immune responses to Vibrio cholerae
  JOURNAL   J Infect Dis 204 (9), 1349-1357 (2011)
   PUBMED   21900486
REFERENCE   2  (bases 1 to 1639)
  AUTHORS   Bingle,C.D., Seal,R.L. and Craven,C.J.
  TITLE     Systematic nomenclature for the PLUNC/PSP/BSP30/SMGB proteins as a
            subfamily of the BPI fold-containing superfamily
  JOURNAL   Biochem Soc Trans 39 (4), 977-983 (2011)
   PUBMED   21787333
REFERENCE   3  (bases 1 to 1639)
  AUTHORS   Bingle,C.D., Wilson,K., Lunn,H., Barnes,F.A., High,A.S.,
            Wallace,W.A., Rassl,D., Campos,M.A., Ribeiro,M. and Bingle,L.
  TITLE     Human LPLUNC1 is a secreted product of goblet cells and minor
            glands of the respiratory and upper aerodigestive tracts
  JOURNAL   Histochem Cell Biol 133 (5), 505-515 (2010)
   PUBMED   20237794
REFERENCE   4  (bases 1 to 1639)
  AUTHORS   Gonzalez-Begne,M., Lu,B., Han,X., Hagen,F.K., Hand,A.R.,
            Melvin,J.E. and Yates,J.R.
  TITLE     Proteomic analysis of human parotid gland exosomes by
            multidimensional protein identification technology (MudPIT)
  JOURNAL   J Proteome Res 8 (3), 1304-1314 (2009)
   PUBMED   19199708
REFERENCE   5  (bases 1 to 1639)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC127515.1.
            
            On or before Nov 15, 2006 this sequence version replaced
            XM_575270.2, XM_001064430.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC127515.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676784, SAMN16676785
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1639              BC127515.1         1-1639
FEATURES             Location/Qualifiers
     source          1..1639
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q41"
     gene            1..1639
                     /gene="Bpifb1"
                     /gene_synonym="Lplunc1; RGD1563047"
                     /note="BPI fold containing family B, member 1"
                     /db_xref="GeneID:499926"
                     /db_xref="RGD:1563047"
     exon            1..49
                     /gene="Bpifb1"
                     /gene_synonym="Lplunc1; RGD1563047"
                     /inference="alignment:Splign:2.1.0"
     exon            50..163
                     /gene="Bpifb1"
                     /gene_synonym="Lplunc1; RGD1563047"
                     /inference="alignment:Splign:2.1.0"
     CDS             52..1473
                     /gene="Bpifb1"
                     /gene_synonym="Lplunc1; RGD1563047"
                     /note="long palate, lung and nasal epithelium
                     carcinoma-associated protein 1; fold containing family B,
                     member 1"
                     /codon_start=1
                     /product="BPI fold-containing family B member 1 precursor"
                     /protein_id="NP_001071148.2"
                     /db_xref="GeneID:499926"
                     /db_xref="RGD:1563047"
                     /translation="MKMTNPWIVSLLLGATLVQANLYPPAVLNLGPEVIKKHLTQALE
                     NHDATAILQELPLLRGMQDKSGSIPILDSFVNTVLRYIIWMKVTSANILQLVVQPSTY
                     DQELVVRIPLDMVAGLNTPLIKTIVEFQMSTEVQALIRVERSKNGPARLNLSDCSSNE
                     STLRLSLLHKLSFVVNSLAKNVMNLLMPALPQIVKSHLCPVIQQAFDDMYEDFLRLTT
                     APIALSPGALEFDLLSPAIQDSNILFNLKAKLLDSQARVTNWFNGSATPLMETTPDRA
                     PFSLTVRQDLVNAIVTTLIPQEELVILLRFVIPDVARQLQMDIKEINAEAANKLGPTQ
                     MLKIFTHSTPHIVLNEGGATAAQSVVLEVFPTNTDVRPFFSLGIEASYEAQFFIAENR
                     LMLNFNNVSIERIKLMISDIKLFDPEVLKDTLTKILEYTLLPNENGKLRTGIPMSMPK
                     ALGYEKAMWSVSKGALKLTPASS"
     exon            164..302
                     /gene="Bpifb1"
                     /gene_synonym="Lplunc1; RGD1563047"
                     /inference="alignment:Splign:2.1.0"
     exon            303..410
                     /gene="Bpifb1"
                     /gene_synonym="Lplunc1; RGD1563047"
                     /inference="alignment:Splign:2.1.0"
     exon            411..560
                     /gene="Bpifb1"
                     /gene_synonym="Lplunc1; RGD1563047"
                     /inference="alignment:Splign:2.1.0"
     exon            561..642
                     /gene="Bpifb1"
                     /gene_synonym="Lplunc1; RGD1563047"
                     /inference="alignment:Splign:2.1.0"
     exon            643..706
                     /gene="Bpifb1"
                     /gene_synonym="Lplunc1; RGD1563047"
                     /inference="alignment:Splign:2.1.0"
     exon            707..792
                     /gene="Bpifb1"
                     /gene_synonym="Lplunc1; RGD1563047"
                     /inference="alignment:Splign:2.1.0"
     exon            793..972
                     /gene="Bpifb1"
                     /gene_synonym="Lplunc1; RGD1563047"
                     /inference="alignment:Splign:2.1.0"
     exon            973..1026
                     /gene="Bpifb1"
                     /gene_synonym="Lplunc1; RGD1563047"
                     /inference="alignment:Splign:2.1.0"
     exon            1027..1185
                     /gene="Bpifb1"
                     /gene_synonym="Lplunc1; RGD1563047"
                     /inference="alignment:Splign:2.1.0"
     exon            1186..1253
                     /gene="Bpifb1"
                     /gene_synonym="Lplunc1; RGD1563047"
                     /inference="alignment:Splign:2.1.0"
     exon            1254..1299
                     /gene="Bpifb1"
                     /gene_synonym="Lplunc1; RGD1563047"
                     /inference="alignment:Splign:2.1.0"
     exon            1300..1363
                     /gene="Bpifb1"
                     /gene_synonym="Lplunc1; RGD1563047"
                     /inference="alignment:Splign:2.1.0"
     exon            1364..1440
                     /gene="Bpifb1"
                     /gene_synonym="Lplunc1; RGD1563047"
                     /inference="alignment:Splign:2.1.0"
     exon            1441..1601
                     /gene="Bpifb1"
                     /gene_synonym="Lplunc1; RGD1563047"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1584..1589
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Bpifb1"
                     /gene_synonym="Lplunc1; RGD1563047"
     polyA_site      1601
                     /gene="Bpifb1"
                     /gene_synonym="Lplunc1; RGD1563047"
ORIGIN      
        1 gaatttgctt cgcttgggtc ttagaggctc tgctcctgga caccccaagc catgaagatg
       61 accaacccat ggatcgtcag cctcctgctg ggagccacac tggtccaagc taacctctat
      121 cctcctgcag tgctcaacct tggcccagaa gtcatcaaga agcacctgac ccaggcactg
      181 gagaaccacg atgccactgc catcctccag gagttgccgc tgctcagagg catgcaagat
      241 aagtctggca gcatccccat attggacagc ttcgtgaaca ctgttctgag atacatcatc
      301 tggatgaagg tcacctctgc taacattctc cagctggttg tgcagccttc aacctatgac
      361 caggagctgg tagtcagaat ccccctggac atggtggctg gattaaacac gccactgatc
      421 aagaccatag tggagttcca aatgagcacc gaggtccaag ccctcatccg ggtggagagg
      481 agcaagaacg gccctgcccg cctgaacctc agtgactgtt ccagcaacga gagcacgctg
      541 cgcctcagcc tgcttcacaa gctctccttc gtggtcaact ccttggcaaa gaacgttatg
      601 aatctcctga tgccagccct gccccaaata gtgaaaagcc acctgtgccc tgtgatccag
      661 caggcctttg atgacatgta cgaagacttc ctgaggctga ccacagcacc cattgccctc
      721 agccctggag ccctggagtt tgaccttctg tctcctgcca tccaggacag taacatcctg
      781 ttcaacctga aggccaagct gctggactca caggcaaggg taaccaactg gttcaacggc
      841 tctgcgactc ctctgatgga gaccacccca gacagggccc ctttcagcct gactgtgagg
      901 caggacctag tgaatgccat tgtgaccacc ctgatccccc aggaggagct tgtaatcctg
      961 ctcagattcg tgattcctga tgtggcccgc cagttacaga tggacatcaa ggagatcaat
     1021 gcagaggcag ccaacaagtt ggggcccacc cagatgttga agatcttcac tcacagcacc
     1081 ccccatattg tgctgaatga gggcggtgcc acggcagccc aaagtgttgt actggaagtg
     1141 ttccccacca atacagatgt ccgacccttc ttctctctcg gcattgaagc cagttatgaa
     1201 gctcagtttt tcatagcaga aaaccgactt atgctcaact tcaataacgt cagtatcgag
     1261 cgcatcaagc tgatgatctc ggatatcaaa ctgttcgatc ctgaagtcct gaaggacact
     1321 ctgaccaaga tccttgagta cacattgctg cccaatgaga atggcaaact gaggactgga
     1381 atccccatgt caatgcccaa ggccttgggg tatgagaaag ccatgtggtc tgtgagcaag
     1441 ggtgccctca agctcactcc agcctcctcc taggaccctg gctctcctcc ctcctgatga
     1501 agacctggac agtagcagcc agccccggcc aggtcccagc tgggaatgtg gaagcctgcc
     1561 atgtagacta ttcccctgca attaataaac acttgccagt gaaaaaaaaa aaaaaaaaaa
     1621 aaaaaaaaaa aaaaaaaaa
//
