LOCUS       XM_039105071            1088 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus BPI fold containing family A, member 5
            (Bpifa5), transcript variant X1, mRNA.
ACCESSION   XM_039105071
VERSION     XM_039105071.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039105071.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1088
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1088
                     /gene="Bpifa5"
                     /gene_synonym="RGD1559748; Splunc5"
                     /note="BPI fold containing family A, member 5; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 ESTs, 7 Proteins, and 97% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:311559"
                     /db_xref="RGD:1559748"
     CDS             67..879
                     /gene="Bpifa5"
                     /gene_synonym="RGD1559748; Splunc5"
                     /codon_start=1
                     /product="palate lung and nasal carcinoma-like protein
                     isoform X1"
                     /protein_id="XP_038960999.1"
                     /db_xref="GeneID:311559"
                     /db_xref="RGD:1559748"
                     /translation="MFLVGSLIVLCGLLAQSTAQLAGMHFPLGQDLPTSMGHCRSLHV
                     DQTLPYYGGTPVLSTYPTYHLDKNFREAFRQGLLSGGILSFLEHIPLLSHVKPTGSNA
                     GGLVGVLGKVISSIPLLNNILDIRVTNPQLLEIGLVQSYDFHRLYVTIPLGFDLKVNT
                     LVVGSLLELSVKLDVTAEVYAVRDMYGRSRLVIGDCIYPPGSLRISLLNRLGPLQNLI
                     DSLTDILTRVIPGLVQGVVCPLVNGVLSLLDVSLAHDVADVLLRGVQFVIKA"
ORIGIN      
        1 tgcagagaat cctctgatat ccataccaca gagaacttgt cattctgtct gcagacacca
       61 agagagatgt ttctagttgg gagtctcatc gtcctctgtg ggctgctggc ccagagcaca
      121 gcccagctgg caggcatgca cttccccctg ggccaagatc tgcccacgtc tatgggtcac
      181 tgccggtcct tgcacgtgga ccagaccctg ccctactatg gagggactcc agtcctgtcc
      241 acgtatccta cataccatct tgataaaaac ttcagagaag ctttcagaca aggcctgctg
      301 tctgggggca ttctgagctt tctggaacac ataccactct tgagccatgt gaaacctaca
      361 ggaagcaatg ctggtggcct ggttggggtg cttggaaaag tgatttcatc aattcctctc
      421 ctgaacaaca tccttgacat aagagtcact aatccccagt tactggaaat cggtcttgtg
      481 cagagctatg atttccaccg cctctatgtt accatcccgc tgggctttga tctcaaagtg
      541 aacacactgg tggttggaag tctgttggag ctgtctgtga agctggatgt cactgcagaa
      601 gtctatgctg tgagagacat gtatgggagg agccgtctgg tcattggtga ctgtatttac
      661 cctcctggca gcttgcgtat ctccttgctt aatagacttg gtcccctgca aaaccttata
      721 gacagtctca cagacatctt gactagagtc atccctggcc tggtgcaggg tgtggtgtgt
      781 cctctggtca atggggttct cagcctcttg gatgtcagcc tagcacatga tgttgctgat
      841 gtgctgctgc gtggagtaca atttgtcatt aaggcctaag ccttccaaga aaggacctgt
      901 ctctgctgcg atgaaccatt tcttgctgct ctgctcactc cctcctgccc aacttgtatg
      961 gctcacagat gggagcccca tgtcctgaaa aatatggcat gaccatcttc tcaaggaaac
     1021 ctctctcctc ctttctcagg cttgatggat aacccatgtt catctctaaa taaaatggtt
     1081 cttctaca
//
